[INFO] cloning repository https://github.com/wtzhang23/bamgen
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/wtzhang23/bamgen" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwtzhang23%2Fbamgen", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwtzhang23%2Fbamgen'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 3d59832e20c0d9c88e0ea1a9b5a2cc5edb044927
[INFO] checking wtzhang23/bamgen against try#a7a572ce3edd6d476191fbfe92c9c1986e009b34 for pr-87190-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwtzhang23%2Fbamgen" "/workspace/builds/worker-11/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-11/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/wtzhang23/bamgen on toolchain a7a572ce3edd6d476191fbfe92c9c1986e009b34
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/wtzhang23/bamgen
[INFO] finished tweaking git repo https://github.com/wtzhang23/bamgen
[INFO] tweaked toml for git repo https://github.com/wtzhang23/bamgen written to /workspace/builds/worker-11/source/Cargo.toml
[INFO] crate git repo https://github.com/wtzhang23/bamgen already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded bio-types v0.7.0
[INFO] [stderr]   Downloaded libc v0.2.79
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded tinyvec v0.3.4
[INFO] [stderr]   Downloaded serde_derive v1.0.116
[INFO] [stderr]   Downloaded ron v0.6.2
[INFO] [stderr]   Downloaded bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]   Downloaded rust-htslib v0.32.0
[INFO] [stderr]   Downloaded hts-sys v1.10.3
[INFO] [stderr]   Downloaded lzma-sys v0.1.16
[INFO] [stderr]   Downloaded openssl-src v111.11.0+1.1.1h
[INFO] [stderr]   Downloaded cc v1.0.60
[INFO] [stderr]   Downloaded curl-sys v0.4.36+curl-7.71.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 81777ea0e432888eb9cf196fc7e4f3e63a20aad14a30c3e3af277c54e7b16a1f
[INFO] running `Command { std: "docker" "start" "-a" "81777ea0e432888eb9cf196fc7e4f3e63a20aad14a30c3e3af277c54e7b16a1f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "81777ea0e432888eb9cf196fc7e4f3e63a20aad14a30c3e3af277c54e7b16a1f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "81777ea0e432888eb9cf196fc7e4f3e63a20aad14a30c3e3af277c54e7b16a1f", kill_on_drop: false }`
[INFO] [stdout] 81777ea0e432888eb9cf196fc7e4f3e63a20aad14a30c3e3af277c54e7b16a1f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d67f1dd6f9feecb5dc76d8377d67d66760304d96fb1aab7083f7534118bfb8ca
[INFO] running `Command { std: "docker" "start" "-a" "d67f1dd6f9feecb5dc76d8377d67d66760304d96fb1aab7083f7534118bfb8ca", kill_on_drop: false }`
[INFO] [stderr] Copying to /tmp/fixit
[INFO] [stderr] Running `cargo fix --edition`
[INFO] [stderr]    Compiling pkg-config v0.3.18
[INFO] [stderr]    Compiling syn v1.0.42
[INFO] [stderr]    Compiling serde_derive v1.0.116
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling serde v1.0.116
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling getrandom v0.1.15
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking matches v0.1.8
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]     Checking regex-syntax v0.6.18
[INFO] [stderr]     Checking ppv-lite86 v0.2.9
[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]     Checking unicode-width v0.1.8
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking os_str_bytes v2.3.2
[INFO] [stderr]    Compiling indexmap v1.6.0
[INFO] [stderr]    Compiling libc v0.2.79
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking unicode-bidi v0.3.4
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]     Checking textwrap v0.12.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking idna v0.2.0
[INFO] [stderr]    Compiling jobserver v0.1.21
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling cc v1.0.60
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]     Checking aho-corasick v0.7.13
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]    Compiling openssl-src v111.11.0+1.1.1h
[INFO] [stderr]     Checking url v2.1.1
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]    Compiling hts-sys v1.10.3
[INFO] [stderr]     Checking regex v1.3.9
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling thiserror-impl v1.0.20
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.2
[INFO] [stderr]     Checking thiserror v1.0.20
[INFO] [stderr]     Checking clap v3.0.0-beta.2
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking ron v0.6.2
[INFO] [stderr]     Checking rust-htslib v0.32.0
[INFO] [stderr]     Checking bamgen v0.1.0 (/tmp/fixit)
[INFO] [stderr]    Migrating src/main.rs from 2018 edition to 2021
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 13s
[INFO] [stderr] Running `cargo check` to verify 2021
[INFO] [stderr]     Checking bamgen v0.1.0 (/tmp/fixit)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.71s
[INFO] running `Command { std: "docker" "inspect" "d67f1dd6f9feecb5dc76d8377d67d66760304d96fb1aab7083f7534118bfb8ca", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d67f1dd6f9feecb5dc76d8377d67d66760304d96fb1aab7083f7534118bfb8ca", kill_on_drop: false }`
[INFO] [stdout] d67f1dd6f9feecb5dc76d8377d67d66760304d96fb1aab7083f7534118bfb8ca