[INFO] cloning repository https://github.com/mooreryan/geneious-nexus
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mooreryan/geneious-nexus" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fgeneious-nexus", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fgeneious-nexus'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 2873c42f18fb1536245e7de82ff4a85af1ab7860
[INFO] checking mooreryan/geneious-nexus against try#a7a572ce3edd6d476191fbfe92c9c1986e009b34 for pr-87190-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fgeneious-nexus" "/workspace/builds/worker-55/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-55/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/mooreryan/geneious-nexus on toolchain a7a572ce3edd6d476191fbfe92c9c1986e009b34
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/mooreryan/geneious-nexus
[INFO] finished tweaking git repo https://github.com/mooreryan/geneious-nexus
[INFO] tweaked toml for git repo https://github.com/mooreryan/geneious-nexus written to /workspace/builds/worker-55/source/Cargo.toml
[INFO] crate git repo https://github.com/mooreryan/geneious-nexus already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bio-types v0.7.0
[INFO] [stderr]   Downloaded bio v0.31.0
[INFO] [stderr]   Downloaded multimap v0.6.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 3a40826b51f9dd1eb54d5e158aab5b728e0fcdffa5473439ebea34af77a0f91d
[INFO] running `Command { std: "docker" "start" "-a" "3a40826b51f9dd1eb54d5e158aab5b728e0fcdffa5473439ebea34af77a0f91d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3a40826b51f9dd1eb54d5e158aab5b728e0fcdffa5473439ebea34af77a0f91d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3a40826b51f9dd1eb54d5e158aab5b728e0fcdffa5473439ebea34af77a0f91d", kill_on_drop: false }`
[INFO] [stdout] 3a40826b51f9dd1eb54d5e158aab5b728e0fcdffa5473439ebea34af77a0f91d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-55/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a47eb736a355cebfadc346cb30992f17c80c47733e27508d3e8875af0b57d765
[INFO] running `Command { std: "docker" "start" "-a" "a47eb736a355cebfadc346cb30992f17c80c47733e27508d3e8875af0b57d765", kill_on_drop: false }`
[INFO] [stderr] Copying to /tmp/fixit
[INFO] [stderr] Running `cargo fix --edition`
[INFO] [stderr]    Compiling proc-macro2 v1.0.18
[INFO] [stderr]    Compiling syn v1.0.34
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling serde_derive v1.0.114
[INFO] [stderr]    Compiling serde v1.0.114
[INFO] [stderr]    Compiling libc v0.2.72
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking ppv-lite86 v0.2.8
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking regex-syntax v0.6.18
[INFO] [stderr]     Checking unicode-width v0.1.8
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking bit-vec v0.6.2
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]    Compiling bio v0.31.0
[INFO] [stderr]     Checking ordermap v0.3.5
[INFO] [stderr]     Checking fixedbitset v0.1.9
[INFO] [stderr]     Checking strum v0.18.0
[INFO] [stderr]     Checking bytecount v0.6.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking petgraph v0.4.13
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.3
[INFO] [stderr]    Compiling proc-macro-error v1.0.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]     Checking aho-corasick v0.7.13
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking regex v1.3.9
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking ordered-float v1.1.0
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]    Compiling syn-mid v0.5.0
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling snafu-derive v0.6.8
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling structopt-derive v0.4.8
[INFO] [stderr]     Checking snafu v0.6.8
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bstr v0.2.13
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking clap v2.33.1
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking structopt v0.3.15
[INFO] [stderr]     Checking geneious-nexus v0.1.0 (/tmp/fixit)
[INFO] [stderr]    Migrating src/lib.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating src/main.rs from 2018 edition to 2021
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 37.26s
[INFO] [stderr] Running `cargo check` to verify 2021
[INFO] [stderr]     Checking geneious-nexus v0.1.0 (/tmp/fixit)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.78s
[INFO] running `Command { std: "docker" "inspect" "a47eb736a355cebfadc346cb30992f17c80c47733e27508d3e8875af0b57d765", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a47eb736a355cebfadc346cb30992f17c80c47733e27508d3e8875af0b57d765", kill_on_drop: false }`
[INFO] [stdout] a47eb736a355cebfadc346cb30992f17c80c47733e27508d3e8875af0b57d765