[INFO] cloning repository https://github.com/laeblab/crispy
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/laeblab/crispy" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flaeblab%2Fcrispy", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flaeblab%2Fcrispy'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 5d1c69457c80ee0867dc55ddf1ad74a3b6909ccf
[INFO] checking laeblab/crispy against try#a7a572ce3edd6d476191fbfe92c9c1986e009b34 for pr-87190-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flaeblab%2Fcrispy" "/workspace/builds/worker-8/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/laeblab/crispy on toolchain a7a572ce3edd6d476191fbfe92c9c1986e009b34
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/laeblab/crispy
[INFO] finished tweaking git repo https://github.com/laeblab/crispy
[INFO] tweaked toml for git repo https://github.com/laeblab/crispy written to /workspace/builds/worker-8/source/Cargo.toml
[INFO] crate git repo https://github.com/laeblab/crispy already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 47ec0dda3b55ec7ce070b3feacaaf603bd5f58a281ed77298aaeb7f31f59c1b0
[INFO] running `Command { std: "docker" "start" "-a" "47ec0dda3b55ec7ce070b3feacaaf603bd5f58a281ed77298aaeb7f31f59c1b0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "47ec0dda3b55ec7ce070b3feacaaf603bd5f58a281ed77298aaeb7f31f59c1b0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "47ec0dda3b55ec7ce070b3feacaaf603bd5f58a281ed77298aaeb7f31f59c1b0", kill_on_drop: false }`
[INFO] [stdout] 47ec0dda3b55ec7ce070b3feacaaf603bd5f58a281ed77298aaeb7f31f59c1b0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f961a2a2803a671048b2469f81bbc5c43b73f89014bc4fdd5da3d91d78452ab6
[INFO] running `Command { std: "docker" "start" "-a" "f961a2a2803a671048b2469f81bbc5c43b73f89014bc4fdd5da3d91d78452ab6", kill_on_drop: false }`
[INFO] [stderr] Copying to /tmp/fixit
[INFO] [stderr] Running `cargo fix --edition`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libc v0.2.71
[INFO] [stderr]    Compiling proc-macro2 v1.0.5
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling syn v1.0.5
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling autocfg v0.1.6
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]    Compiling serde v1.0.101
[INFO] [stderr]    Compiling semver-parser v0.7.0
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling arrayvec v0.4.12
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling cc v1.0.45
[INFO] [stderr]     Checking unicode-width v0.1.6
[INFO] [stderr]     Checking ppv-lite86 v0.2.8
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]     Checking scopeguard v1.0.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling ryu v1.0.0
[INFO] [stderr]    Compiling rayon-core v1.6.0
[INFO] [stderr]    Compiling bitflags v1.2.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling unicode-segmentation v1.3.0
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking fixedbitset v0.1.9
[INFO] [stderr]     Checking quick-error v1.2.2
[INFO] [stderr]     Checking bit-vec v0.5.1
[INFO] [stderr]     Checking rustc-demangle v0.1.16
[INFO] [stderr]    Compiling bio v0.31.0
[INFO] [stderr]     Checking ordermap v0.3.5
[INFO] [stderr]     Checking bytecount v0.6.0
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]     Checking number_prefix v0.3.0
[INFO] [stderr]     Checking strum v0.18.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking fnv v1.0.6
[INFO] [stderr]    Compiling error-chain v0.12.1
[INFO] [stderr]     Checking thread_local v0.3.6
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking crossbeam-utils v0.6.6
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]     Checking regex-automata v0.1.8
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking bit-set v0.5.1
[INFO] [stderr]    Compiling semver v0.9.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking petgraph v0.4.13
[INFO] [stderr]     Checking crossbeam-queue v0.1.2
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling num-traits v0.2.8
[INFO] [stderr]    Compiling num-complex v0.2.3
[INFO] [stderr]    Compiling num-integer v0.1.41
[INFO] [stderr]    Compiling rustc_version v0.2.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling backtrace-sys v0.1.31
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]    Compiling memoffset v0.5.1
[INFO] [stderr]     Checking clicolors-control v1.0.1
[INFO] [stderr]     Checking termios v0.3.1
[INFO] [stderr]     Checking num_cpus v1.10.1
[INFO] [stderr]     Checking atty v0.2.13
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking crossbeam-epoch v0.7.2
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking aho-corasick v0.7.6
[INFO] [stderr]     Checking csv-core v0.1.6
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking ordered-float v1.0.2
[INFO] [stderr]     Checking crossbeam-deque v0.7.1
[INFO] [stderr]     Checking backtrace v0.3.38
[INFO] [stderr]     Checking regex v1.3.1
[INFO] [stderr]     Checking rayon v1.2.0
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]     Checking console v0.9.0
[INFO] [stderr]     Checking indicatif v0.12.0
[INFO] [stderr]    Compiling serde_derive v1.0.101
[INFO] [stderr]    Compiling snafu-derive v0.6.8
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]     Checking snafu v0.6.8
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking bstr v0.2.8
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking bio-types v0.5.1
[INFO] [stderr]     Checking clap v2.33.0
[INFO] [stderr]     Checking csv v1.1.1
[INFO] [stderr]     Checking crispyr v0.2.0 (/tmp/fixit)
[INFO] [stderr]    Migrating src/lib.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating src/main.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating tests/iupac.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating tests/enzyme.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating tests/pam.rs from 2018 edition to 2021
[INFO] [stderr]    Migrating tests/index.rs from 2018 edition to 2021
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 36.28s
[INFO] [stderr] Running `cargo check` to verify 2021
[INFO] [stderr]     Checking crispyr v0.2.0 (/tmp/fixit)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2.08s
[INFO] running `Command { std: "docker" "inspect" "f961a2a2803a671048b2469f81bbc5c43b73f89014bc4fdd5da3d91d78452ab6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f961a2a2803a671048b2469f81bbc5c43b73f89014bc4fdd5da3d91d78452ab6", kill_on_drop: false }`
[INFO] [stdout] f961a2a2803a671048b2469f81bbc5c43b73f89014bc4fdd5da3d91d78452ab6