[INFO] cloning repository https://github.com/joyliu-q/rust-genomics [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/joyliu-q/rust-genomics" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoyliu-q%2Frust-genomics", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoyliu-q%2Frust-genomics'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] a62b7e31b41dd1efe396e5ee25b420c4b5bdb887 [INFO] checking joyliu-q/rust-genomics against try#a7a572ce3edd6d476191fbfe92c9c1986e009b34 for pr-87190-3 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoyliu-q%2Frust-genomics" "/workspace/builds/worker-0/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/joyliu-q/rust-genomics on toolchain a7a572ce3edd6d476191fbfe92c9c1986e009b34 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/joyliu-q/rust-genomics [INFO] finished tweaking git repo https://github.com/joyliu-q/rust-genomics [INFO] tweaked toml for git repo https://github.com/joyliu-q/rust-genomics written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate git repo https://github.com/joyliu-q/rust-genomics already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rayon-core v1.8.1 [INFO] [stderr] Downloaded rayon v1.4.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 87cd550f98f1bd8f02022ca6ed17923ddd16078321bf4874fc63ecdaf18bd2c1 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "87cd550f98f1bd8f02022ca6ed17923ddd16078321bf4874fc63ecdaf18bd2c1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "87cd550f98f1bd8f02022ca6ed17923ddd16078321bf4874fc63ecdaf18bd2c1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "87cd550f98f1bd8f02022ca6ed17923ddd16078321bf4874fc63ecdaf18bd2c1", kill_on_drop: false }` [INFO] [stdout] 87cd550f98f1bd8f02022ca6ed17923ddd16078321bf4874fc63ecdaf18bd2c1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 95058be9b721c19772b6e4bf0ab3d4f3c20f40b61f5804ee9f0ff029aff60124 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "95058be9b721c19772b6e4bf0ab3d4f3c20f40b61f5804ee9f0ff029aff60124", kill_on_drop: false }` [INFO] [stderr] Copying to /tmp/fixit [INFO] [stderr] Running `cargo fix --edition` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling libc v0.2.79 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling rayon-core v1.8.1 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.45 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking ppv-lite86 v0.2.9 [INFO] [stderr] Checking itoa v0.4.6 [INFO] [stderr] Compiling serde_json v1.0.59 [INFO] [stderr] Compiling serde_derive v1.0.117 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking strsim v0.10.0 [INFO] [stderr] Checking same-file v1.0.6 [INFO] [stderr] Checking regex-syntax v0.6.20 [INFO] [stderr] Checking oorandom v11.1.2 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking walkdir v2.3.1 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling rayon v1.4.1 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Checking bstr v0.2.14 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling cast v0.2.3 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking regex v1.4.1 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking criterion-plot v0.4.3 [INFO] [stderr] Checking tinytemplate v1.1.0 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking plotters v0.2.15 [INFO] [stderr] Checking rust-genomics v0.1.0 (/tmp/fixit) [INFO] [stderr] Migrating src/lib.rs from 2018 edition to 2021 [INFO] [stderr] Fixed src/lib.rs (2 fixes) [INFO] [stdout] warning: unused import: `Write` [INFO] [stdout] --> src/lib.rs:7:15 [INFO] [stdout] | [INFO] [stdout] 7 | use std::io::{Write, BufReader, BufRead}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum is never used: `Nucleotide` [INFO] [stdout] --> src/lib.rs:21:6 [INFO] [stdout] | [INFO] [stdout] 21 | enum Nucleotide { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `to_char` [INFO] [stdout] --> src/lib.rs:28:8 [INFO] [stdout] | [INFO] [stdout] 28 | fn to_char(&self) -> char { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `index_to_nt` [INFO] [stdout] --> src/lib.rs:36:8 [INFO] [stdout] | [INFO] [stdout] 36 | fn index_to_nt(index: usize) -> Result { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `check` [INFO] [stdout] --> src/lib.rs:82:8 [INFO] [stdout] | [INFO] [stdout] 82 | fn check(&self) -> bool { [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/lib.rs:307:9 [INFO] [stdout] | [INFO] [stdout] 307 | write!(f, "File Name: {}\n", self.name); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/lib.rs:309:13 [INFO] [stdout] | [INFO] [stdout] 309 | write!(f, "Header: {}\nSequence: {}\n\n", record.header, record.sequence); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 7 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Migrating src/main.rs from 2018 edition to 2021 [INFO] [stderr] Fixed src/main.rs (1 fix) [INFO] [stderr] Checking criterion v0.3.3 [INFO] [stderr] Migrating benches/my_benchmark.rs from 2018 edition to 2021 [INFO] [stdout] warning: unused import: `Write` [INFO] [stdout] --> src/lib.rs:7:15 [INFO] [stdout] | [INFO] [stdout] 7 | use std::io::{Write, BufReader, BufRead}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum is never used: `Nucleotide` [INFO] [stdout] --> src/lib.rs:21:6 [INFO] [stdout] | [INFO] [stdout] 21 | enum Nucleotide { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `to_char` [INFO] [stdout] --> src/lib.rs:28:8 [INFO] [stdout] | [INFO] [stdout] 28 | fn to_char(&self) -> char { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `index_to_nt` [INFO] [stdout] --> src/lib.rs:36:8 [INFO] [stdout] | [INFO] [stdout] 36 | fn index_to_nt(index: usize) -> Result { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `check` [INFO] [stdout] --> src/lib.rs:82:8 [INFO] [stdout] | [INFO] [stdout] 82 | fn check(&self) -> bool { [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/lib.rs:307:9 [INFO] [stdout] | [INFO] [stdout] 307 | write!(f, "File Name: {}\n", self.name); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/lib.rs:309:13 [INFO] [stdout] | [INFO] [stdout] 309 | write!(f, "Header: {}\nSequence: {}\n\n", record.header, record.sequence); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 7 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Fixed benches/my_benchmark.rs (2 fixes) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 19s [INFO] [stderr] Running `cargo check` to verify 2021 [INFO] [stderr] Compiling syn v1.0.45 [INFO] [stderr] Checking rust-genomics v0.1.0 (/tmp/fixit) [INFO] [stdout] warning: unused import: `Write` [INFO] [stdout] --> src/lib.rs:7:15 [INFO] [stdout] | [INFO] [stdout] 7 | use std::io::{Write, BufReader, BufRead}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum is never used: `Nucleotide` [INFO] [stdout] --> src/lib.rs:21:6 [INFO] [stdout] | [INFO] [stdout] 21 | enum Nucleotide { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `to_char` [INFO] [stdout] --> src/lib.rs:28:8 [INFO] [stdout] | [INFO] [stdout] 28 | fn to_char(&self) -> char { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `index_to_nt` [INFO] [stdout] --> src/lib.rs:36:8 [INFO] [stdout] | [INFO] [stdout] 36 | fn index_to_nt(index: usize) -> Result { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `check` [INFO] [stdout] --> src/lib.rs:82:8 [INFO] [stdout] | [INFO] [stdout] 82 | fn check(&self) -> bool { [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/lib.rs:307:9 [INFO] [stdout] | [INFO] [stdout] 307 | write!(f, "File Name: {}\n", self.name); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/lib.rs:309:13 [INFO] [stdout] | [INFO] [stdout] 309 | write!(f, "Header: {}\nSequence: {}\n\n", record.header, record.sequence); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 7 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling serde_derive v1.0.117 [INFO] [stderr] Checking criterion v0.3.3 [INFO] [stdout] warning: unused import: `Write` [INFO] [stdout] --> src/lib.rs:7:15 [INFO] [stdout] | [INFO] [stdout] 7 | use std::io::{Write, BufReader, BufRead}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum is never used: `Nucleotide` [INFO] [stdout] --> src/lib.rs:21:6 [INFO] [stdout] | [INFO] [stdout] 21 | enum Nucleotide { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `to_char` [INFO] [stdout] --> src/lib.rs:28:8 [INFO] [stdout] | [INFO] [stdout] 28 | fn to_char(&self) -> char { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `index_to_nt` [INFO] [stdout] --> src/lib.rs:36:8 [INFO] [stdout] | [INFO] [stdout] 36 | fn index_to_nt(index: usize) -> Result { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `check` [INFO] [stdout] --> src/lib.rs:82:8 [INFO] [stdout] | [INFO] [stdout] 82 | fn check(&self) -> bool { [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/lib.rs:307:9 [INFO] [stdout] | [INFO] [stdout] 307 | write!(f, "File Name: {}\n", self.name); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/lib.rs:309:13 [INFO] [stdout] | [INFO] [stdout] 309 | write!(f, "Header: {}\nSequence: {}\n\n", record.header, record.sequence); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 7 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 26.48s [INFO] running `Command { std: "docker" "inspect" "95058be9b721c19772b6e4bf0ab3d4f3c20f40b61f5804ee9f0ff029aff60124", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "95058be9b721c19772b6e4bf0ab3d4f3c20f40b61f5804ee9f0ff029aff60124", kill_on_drop: false }` [INFO] [stdout] 95058be9b721c19772b6e4bf0ab3d4f3c20f40b61f5804ee9f0ff029aff60124