[INFO] cloning repository https://github.com/hisakatha/extract-bam-unique-alignment
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/hisakatha/extract-bam-unique-alignment" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhisakatha%2Fextract-bam-unique-alignment", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhisakatha%2Fextract-bam-unique-alignment'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ea8276edeeb0db722d2b36832a19d00841aa91bf
[INFO] checking hisakatha/extract-bam-unique-alignment against try#a7a572ce3edd6d476191fbfe92c9c1986e009b34 for pr-87190-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhisakatha%2Fextract-bam-unique-alignment" "/workspace/builds/worker-14/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-14/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/hisakatha/extract-bam-unique-alignment on toolchain a7a572ce3edd6d476191fbfe92c9c1986e009b34
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/hisakatha/extract-bam-unique-alignment
[INFO] finished tweaking git repo https://github.com/hisakatha/extract-bam-unique-alignment
[INFO] tweaked toml for git repo https://github.com/hisakatha/extract-bam-unique-alignment written to /workspace/builds/worker-14/source/Cargo.toml
[INFO] crate git repo https://github.com/hisakatha/extract-bam-unique-alignment already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded form_urlencoded v1.0.1
[INFO] [stderr]   Downloaded vcpkg v0.2.12
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded url v2.2.2
[INFO] [stderr]   Downloaded cc v1.0.67
[INFO] [stderr]   Downloaded openssl-sys v0.9.63
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded bio-types v0.11.0
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded strum_macros v0.20.1
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded thiserror-impl v1.0.24
[INFO] [stderr]   Downloaded idna v0.2.3
[INFO] [stderr]   Downloaded rust-htslib v0.36.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded libz-sys v1.1.3
[INFO] [stderr]   Downloaded jobserver v0.1.22
[INFO] [stderr]   Downloaded thiserror v1.0.24
[INFO] [stderr]   Downloaded curl-sys v0.4.42+curl-7.76.0
[INFO] [stderr]   Downloaded syn v1.0.72
[INFO] [stderr]   Downloaded lzma-sys v0.1.17
[INFO] [stderr]   Downloaded libc v0.2.94
[INFO] [stderr]   Downloaded bzip2-sys v0.1.10+1.0.8
[INFO] [stderr]   Downloaded hts-sys v1.11.1-fix1
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded openssl-src v111.15.0+1.1.1k
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] e6676daf463cc2b096455633c21472d54a90f59f01e86c5547d5f9ec7e190b2e
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "e6676daf463cc2b096455633c21472d54a90f59f01e86c5547d5f9ec7e190b2e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e6676daf463cc2b096455633c21472d54a90f59f01e86c5547d5f9ec7e190b2e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e6676daf463cc2b096455633c21472d54a90f59f01e86c5547d5f9ec7e190b2e", kill_on_drop: false }`
[INFO] [stdout] e6676daf463cc2b096455633c21472d54a90f59f01e86c5547d5f9ec7e190b2e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 91b562e21ae35ac281cecafcb5618e7fd97c952c4f6c05121d358eaf15bbcc6d
[INFO] running `Command { std: "docker" "start" "-a" "91b562e21ae35ac281cecafcb5618e7fd97c952c4f6c05121d358eaf15bbcc6d", kill_on_drop: false }`
[INFO] [stderr] Copying to /tmp/fixit
[INFO] [stderr] Running `cargo fix --edition`
[INFO] [stderr]    Compiling libc v0.2.94
[INFO] [stderr]    Compiling proc-macro2 v1.0.26
[INFO] [stderr]    Compiling syn v1.0.72
[INFO] [stderr]    Compiling memchr v2.4.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]     Checking regex-syntax v0.6.25
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking tinyvec v1.2.0
[INFO] [stderr]     Checking unicode-bidi v0.3.5
[INFO] [stderr]     Checking form_urlencoded v1.0.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking unicode-normalization v0.1.17
[INFO] [stderr]     Checking aho-corasick v0.7.18
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling jobserver v0.1.22
[INFO] [stderr]    Compiling cc v1.0.67
[INFO] [stderr]     Checking idna v0.2.3
[INFO] [stderr]    Compiling openssl-src v111.15.0+1.1.1k
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling bzip2-sys v0.1.10+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling curl-sys v0.4.42+curl-7.76.0
[INFO] [stderr]    Compiling hts-sys v1.11.1-fix1
[INFO] [stderr]    Compiling openssl-sys v0.9.63
[INFO] [stderr]     Checking url v2.2.2
[INFO] [stderr]     Checking regex v1.5.4
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.24
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]     Checking thiserror v1.0.24
[INFO] [stderr]     Checking bio-types v0.11.0
[INFO] [stderr]     Checking rust-htslib v0.36.0
[INFO] [stderr]     Checking extract_bam_unique_alignment v1.0.1 (/tmp/fixit)
[INFO] [stderr]    Migrating src/main.rs from 2018 edition to 2021
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3m 23s
[INFO] [stderr] Running `cargo check` to verify 2021
[INFO] [stderr]     Checking extract_bam_unique_alignment v1.0.1 (/tmp/fixit)
[INFO] [stdout] warning: the item `TryInto` is imported redundantly
[INFO] [stdout]    --> src/main.rs:3:9
[INFO] [stdout]     |
[INFO] [stdout] 3   |     use std::convert::TryInto;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `TryInto` is imported redundantly
[INFO] [stdout]    --> src/main.rs:3:9
[INFO] [stdout]     |
[INFO] [stdout] 3   |     use std::convert::TryInto;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.84s
[INFO] running `Command { std: "docker" "inspect" "91b562e21ae35ac281cecafcb5618e7fd97c952c4f6c05121d358eaf15bbcc6d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "91b562e21ae35ac281cecafcb5618e7fd97c952c4f6c05121d358eaf15bbcc6d", kill_on_drop: false }`
[INFO] [stdout] 91b562e21ae35ac281cecafcb5618e7fd97c952c4f6c05121d358eaf15bbcc6d