[INFO] cloning repository https://github.com/brainstorm/htsget-indexer
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/brainstorm/htsget-indexer" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrainstorm%2Fhtsget-indexer", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrainstorm%2Fhtsget-indexer'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 182650b6518cdeefad31ab1ca4aa5cb1666e0ab2
[INFO] checking brainstorm/htsget-indexer against try#a7a572ce3edd6d476191fbfe92c9c1986e009b34 for pr-87190-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrainstorm%2Fhtsget-indexer" "/workspace/builds/worker-113/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-113/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/brainstorm/htsget-indexer on toolchain a7a572ce3edd6d476191fbfe92c9c1986e009b34
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/brainstorm/htsget-indexer
[INFO] finished tweaking git repo https://github.com/brainstorm/htsget-indexer
[INFO] tweaked toml for git repo https://github.com/brainstorm/htsget-indexer written to /workspace/builds/worker-113/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bio-types v0.12.0
[INFO] [stderr]   Downloaded bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]   Downloaded lzma-sys v0.1.17
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-113/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-113/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6a4e2be0a3a18abe6844d28f5c9e678dce358b773091b42f6b84f8fff641babe
[INFO] running `Command { std: "docker" "start" "-a" "6a4e2be0a3a18abe6844d28f5c9e678dce358b773091b42f6b84f8fff641babe", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6a4e2be0a3a18abe6844d28f5c9e678dce358b773091b42f6b84f8fff641babe", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6a4e2be0a3a18abe6844d28f5c9e678dce358b773091b42f6b84f8fff641babe", kill_on_drop: false }`
[INFO] [stdout] 6a4e2be0a3a18abe6844d28f5c9e678dce358b773091b42f6b84f8fff641babe
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-113/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-113/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ab392d9ac9016adc7f7ceaf6b5034ebc3f7e71d515184ab8a2b6b606826519a2
[INFO] running `Command { std: "docker" "start" "-a" "ab392d9ac9016adc7f7ceaf6b5034ebc3f7e71d515184ab8a2b6b606826519a2", kill_on_drop: false }`
[INFO] [stderr] Copying to /tmp/fixit
[INFO] [stderr] Running `cargo fix --edition`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr] note: Switching to Edition 2021 will enable the use of the version 2 feature resolver in Cargo.
[INFO] [stderr] This may cause some dependencies to be built with fewer features enabled than previously.
[INFO] [stderr] More information about the resolver changes may be found at https://doc.rust-lang.org/nightly/edition-guide/rust-2021/default-cargo-resolver.html
[INFO] [stderr] When building the following dependencies, the given features will no longer be used:
[INFO] [stderr] 
[INFO] [stderr]   memchr v2.4.1: use_std
[INFO] [stderr] 
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling syn v1.0.75
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling bindgen v0.51.1
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]     Checking gimli v0.25.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling serde_derive v1.0.129
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]     Checking rustc-demangle v0.1.20
[INFO] [stderr]    Compiling serde v1.0.129
[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling backtrace v0.3.61
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling nom v4.2.3
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling libc v0.2.100
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking addr2line v0.16.0
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling humantime v1.3.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling clang-sys v0.28.1
[INFO] [stderr]     Checking form_urlencoded v1.0.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking url v2.2.2
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling which v3.1.1
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]     Checking object v0.26.1
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling cexpr v0.3.6
[INFO] [stderr]    Compiling env_logger v0.6.2
[INFO] [stderr]    Compiling thiserror-impl v1.0.26
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]     Checking snafu v0.6.10
[INFO] [stderr]     Checking thiserror v1.0.26
[INFO] [stderr]     Checking bio-types v0.12.0
[INFO] [stderr]     Checking snafu v0.5.0
[INFO] [stderr]    Compiling rust-htslib v0.26.1
[INFO] [stderr]     Checking serde_json v1.0.66
[INFO] [stderr]     Checking htsget-indexer v0.1.0 (/tmp/fixit)
[INFO] [stderr]    Migrating src/main.rs from 2018 edition to 2021
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 02s
[INFO] [stderr] Running `cargo check` to verify 2021
[INFO] [stderr]     Checking object v0.26.1
[INFO] [stderr]     Checking bio-types v0.12.0
[INFO] [stderr]     Checking backtrace v0.3.61
[INFO] [stderr]     Checking snafu v0.5.0
[INFO] [stderr]     Checking rust-htslib v0.26.1
[INFO] [stderr]     Checking htsget-indexer v0.1.0 (/tmp/fixit)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 7.64s
[INFO] running `Command { std: "docker" "inspect" "ab392d9ac9016adc7f7ceaf6b5034ebc3f7e71d515184ab8a2b6b606826519a2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ab392d9ac9016adc7f7ceaf6b5034ebc3f7e71d515184ab8a2b6b606826519a2", kill_on_drop: false }`
[INFO] [stdout] ab392d9ac9016adc7f7ceaf6b5034ebc3f7e71d515184ab8a2b6b606826519a2