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[INFO] [stderr] This may cause some dependencies to be built with fewer features enabled than previously. [INFO] [stderr] More information about the resolver changes may be found at https://doc.rust-lang.org/nightly/edition-guide/rust-2021/default-cargo-resolver.html [INFO] [stderr] When building the following dependencies, the given features will no longer be used: [INFO] [stderr] [INFO] [stderr] clap v2.33.3 (as host dependency): term_size, wrap_help [INFO] [stderr] libc v0.2.97 (as host dependency): default, std [INFO] [stderr] textwrap v0.11.0 (as host dependency): term_size [INFO] [stderr] vec_map v0.8.2 (as host dependency): eders, serde [INFO] [stderr] [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.27 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.73 [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Compiling libc v0.2.97 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling serde_derive v1.0.126 [INFO] [stderr] Compiling serde v1.0.126 [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] 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v0.5.1 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking num-complex v0.3.1 [INFO] [stderr] Checking num-complex v0.4.0 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking rand_distr v0.2.2 [INFO] [stderr] Checking alga v0.9.3 [INFO] [stderr] Checking nalgebra v0.19.0 [INFO] [stderr] Compiling darling_core v0.13.0 [INFO] [stderr] Compiling velcro_core v0.5.2 [INFO] [stderr] Checking num v0.4.0 [INFO] [stderr] Compiling thiserror-impl v1.0.25 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling velcro_macros v0.5.2 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling darling_macro v0.13.0 [INFO] [stderr] Checking enum-map v0.6.4 [INFO] [stderr] Checking velcro v0.5.3 [INFO] [stderr] Checking thiserror v1.0.25 [INFO] [stderr] Compiling darling v0.13.0 [INFO] [stderr] Compiling serde_with_macros v1.4.2 [INFO] [stderr] Checking bio-types v0.11.0 [INFO] [stderr] Checking statrs v0.13.0 [INFO] [stderr] Checking bstr v0.2.16 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.8.3 [INFO] [stderr] Checking serde_with v1.9.3 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking csv v1.1.6 [INFO] [stderr] Checking jemallocator v0.3.2 [INFO] [stderr] Checking cdr3-parser v0.1.0 (/tmp/fixit) [INFO] [stderr] Migrating src/main.rs from 2018 edition to 2021 [INFO] [stderr] Fixed src/cdr3/protein_analysis.rs (11 fixes) [INFO] [stderr] Fixed src/cdr3/cdr3.rs (9 fixes) [INFO] [stderr] Fixed src/app.rs (1 fix) [INFO] [stderr] Fixed src/main.rs (7 fixes) [INFO] [stdout] warning: function is never used: `molecular_weight` [INFO] [stdout] --> src/cdr3/cdr3.rs:63:8 [INFO] [stdout] | [INFO] [stdout] 63 | pub fn molecular_weight(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `aromaticity` [INFO] [stdout] --> src/cdr3/cdr3.rs:107:8 [INFO] [stdout] | [INFO] [stdout] 107 | pub fn aromaticity(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `create_cdr3_dict` [INFO] [stdout] --> src/cdr3/cdr3.rs:114:8 [INFO] [stdout] | [INFO] [stdout] 114 | pub fn create_cdr3_dict(cdr3_sequence: Vec) -> BTreeMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `aa_groups` [INFO] [stdout] --> src/cdr3/cdr3.rs:125:8 [INFO] [stdout] | [INFO] [stdout] 125 | pub fn aa_groups<'seq>(_sequence: String) -> BTreeMap> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `pK_table` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:491:8 [INFO] [stdout] | [INFO] [stdout] 491 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `select_charged` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:521:8 [INFO] [stdout] | [INFO] [stdout] 521 | fn select_charged(&mut self) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `MW` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:26:9 [INFO] [stdout] | [INFO] [stdout] 26 | pub MW: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `mw` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `AV` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:27:9 [INFO] [stdout] | [INFO] [stdout] 27 | pub AV: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `av` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:28:5 [INFO] [stdout] | [INFO] [stdout] 28 | IP: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `P` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:259:13 [INFO] [stdout] | [INFO] [stdout] 259 | let mut P = ProteinAnalysis::new(sequence, quantity, None); [INFO] [stdout] | ^ help: convert the identifier to snake case: `p` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `H` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:68:13 [INFO] [stdout] | [INFO] [stdout] 68 | let H: HashMap> = [INFO] [stdout] | ^ help: convert the identifier to snake case: `h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:249:9 [INFO] [stdout] | [INFO] [stdout] 249 | pub charge_at_pH: Option, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:258:9 [INFO] [stdout] | [INFO] [stdout] 258 | pub neg_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:259:9 [INFO] [stdout] | [INFO] [stdout] 259 | pub pos_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:266:49 [INFO] [stdout] | [INFO] [stdout] 266 | pub fn new(sequence: &str, quantity: usize, pH: Option) -> Self { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `PA` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:267:17 [INFO] [stdout] | [INFO] [stdout] 267 | let mut PA = ProteinAnalysis { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `pa` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:426:12 [INFO] [stdout] | [INFO] [stdout] 426 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:426:40 [INFO] [stdout] | [INFO] [stdout] 426 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:433:22 [INFO] [stdout] | [INFO] [stdout] 433 | for (aa, pK) in &self.pos_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:444:22 [INFO] [stdout] | [INFO] [stdout] 444 | for (aa, pK) in &self.neg_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `pK_table` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:491:8 [INFO] [stdout] | [INFO] [stdout] 491 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `p_k_table` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:493:17 [INFO] [stdout] | [INFO] [stdout] 493 | let pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:494:17 [INFO] [stdout] | [INFO] [stdout] 494 | let neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKnterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:508:21 [INFO] [stdout] | [INFO] [stdout] 508 | let mut pKnterminal = PKNTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_knterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKcterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:509:21 [INFO] [stdout] | [INFO] [stdout] 509 | let mut pKcterminal = PKCTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_kcterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:546:13 [INFO] [stdout] | [INFO] [stdout] 546 | mut pH: Option, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 26 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `molecular_weight` [INFO] [stdout] --> src/cdr3/cdr3.rs:63:8 [INFO] [stdout] | [INFO] [stdout] 63 | pub fn molecular_weight(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `aromaticity` [INFO] [stdout] --> src/cdr3/cdr3.rs:107:8 [INFO] [stdout] | [INFO] [stdout] 107 | pub fn aromaticity(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `create_cdr3_dict` [INFO] [stdout] --> src/cdr3/cdr3.rs:114:8 [INFO] [stdout] | [INFO] [stdout] 114 | pub fn create_cdr3_dict(cdr3_sequence: Vec) -> BTreeMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `aa_groups` [INFO] [stdout] --> src/cdr3/cdr3.rs:125:8 [INFO] [stdout] | [INFO] [stdout] 125 | pub fn aa_groups<'seq>(_sequence: String) -> BTreeMap> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `pK_table` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:491:8 [INFO] [stdout] | [INFO] [stdout] 491 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `select_charged` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:521:8 [INFO] [stdout] | [INFO] [stdout] 521 | fn select_charged(&mut self) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `MW` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:26:9 [INFO] [stdout] | [INFO] [stdout] 26 | pub MW: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `mw` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `AV` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:27:9 [INFO] [stdout] | [INFO] [stdout] 27 | pub AV: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `av` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:28:5 [INFO] [stdout] | [INFO] [stdout] 28 | IP: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `P` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:259:13 [INFO] [stdout] | [INFO] [stdout] 259 | let mut P = ProteinAnalysis::new(sequence, quantity, None); [INFO] [stdout] | ^ help: convert the identifier to snake case: `p` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `H` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:68:13 [INFO] [stdout] | [INFO] [stdout] 68 | let H: HashMap> = [INFO] [stdout] | ^ help: convert the identifier to snake case: `h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:249:9 [INFO] [stdout] | [INFO] [stdout] 249 | pub charge_at_pH: Option, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:258:9 [INFO] [stdout] | [INFO] [stdout] 258 | pub neg_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:259:9 [INFO] [stdout] | [INFO] [stdout] 259 | pub pos_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:266:49 [INFO] [stdout] | [INFO] [stdout] 266 | pub fn new(sequence: &str, quantity: usize, pH: Option) -> Self { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `PA` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:267:17 [INFO] [stdout] | [INFO] [stdout] 267 | let mut PA = ProteinAnalysis { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `pa` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:426:12 [INFO] [stdout] | [INFO] [stdout] 426 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:426:40 [INFO] [stdout] | [INFO] [stdout] 426 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:433:22 [INFO] [stdout] | [INFO] [stdout] 433 | for (aa, pK) in &self.pos_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:444:22 [INFO] [stdout] | [INFO] [stdout] 444 | for (aa, pK) in &self.neg_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `pK_table` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:491:8 [INFO] [stdout] | [INFO] [stdout] 491 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `p_k_table` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:493:17 [INFO] [stdout] | [INFO] [stdout] 493 | let pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:494:17 [INFO] [stdout] | [INFO] [stdout] 494 | let neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKnterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:508:21 [INFO] [stdout] | [INFO] [stdout] 508 | let mut pKnterminal = PKNTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_knterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKcterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:509:21 [INFO] [stdout] | [INFO] [stdout] 509 | let mut pKcterminal = PKCTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_kcterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:546:13 [INFO] [stdout] | [INFO] [stdout] 546 | mut pH: Option, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 26 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 35s [INFO] [stderr] Running `cargo check` to verify 2021 [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Checking cdr3-parser v0.1.0 (/tmp/fixit) [INFO] [stdout] warning: function is never used: `molecular_weight` [INFO] [stdout] --> src/cdr3/cdr3.rs:63:8 [INFO] [stdout] | [INFO] [stdout] 63 | pub fn molecular_weight(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `aromaticity` [INFO] [stdout] --> src/cdr3/cdr3.rs:107:8 [INFO] [stdout] | [INFO] [stdout] 107 | pub fn aromaticity(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `create_cdr3_dict` [INFO] [stdout] --> src/cdr3/cdr3.rs:114:8 [INFO] [stdout] | [INFO] [stdout] 114 | pub fn create_cdr3_dict(cdr3_sequence: Vec) -> BTreeMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `aa_groups` [INFO] [stdout] --> src/cdr3/cdr3.rs:125:8 [INFO] [stdout] | [INFO] [stdout] 125 | pub fn aa_groups<'seq>(_sequence: String) -> BTreeMap> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `pK_table` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:491:8 [INFO] [stdout] | [INFO] [stdout] 491 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `select_charged` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:521:8 [INFO] [stdout] | [INFO] [stdout] 521 | fn select_charged(&mut self) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `molecular_weight` [INFO] [stdout] --> src/cdr3/cdr3.rs:63:8 [INFO] [stdout] | [INFO] [stdout] 63 | pub fn molecular_weight(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `aromaticity` [INFO] [stdout] --> src/cdr3/cdr3.rs:107:8 [INFO] [stdout] | [INFO] [stdout] 107 | pub fn aromaticity(sequence: &str) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `create_cdr3_dict` [INFO] [stdout] --> src/cdr3/cdr3.rs:114:8 [INFO] [stdout] | [INFO] [stdout] 114 | pub fn create_cdr3_dict(cdr3_sequence: Vec) -> BTreeMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `aa_groups` [INFO] [stdout] --> src/cdr3/cdr3.rs:125:8 [INFO] [stdout] | [INFO] [stdout] 125 | pub fn aa_groups<'seq>(_sequence: String) -> BTreeMap> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `pK_table` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:491:8 [INFO] [stdout] | [INFO] [stdout] 491 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `select_charged` [INFO] [stdout] --> src/cdr3/protein_analysis.rs:521:8 [INFO] [stdout] | [INFO] [stdout] 521 | fn select_charged(&mut self) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `MW` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:26:9 [INFO] [stdout] | [INFO] [stdout] 26 | pub MW: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `mw` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `AV` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:27:9 [INFO] [stdout] | [INFO] [stdout] 27 | pub AV: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `av` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:28:5 [INFO] [stdout] | [INFO] [stdout] 28 | IP: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `P` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:259:13 [INFO] [stdout] | [INFO] [stdout] 259 | let mut P = ProteinAnalysis::new(sequence, quantity, None); [INFO] [stdout] | ^ help: convert the identifier to snake case: `p` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `H` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:68:13 [INFO] [stdout] | [INFO] [stdout] 68 | let H: HashMap> = [INFO] [stdout] | ^ help: convert the identifier to snake case: `h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:249:9 [INFO] [stdout] | [INFO] [stdout] 249 | pub charge_at_pH: Option, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:258:9 [INFO] [stdout] | [INFO] [stdout] 258 | pub neg_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:259:9 [INFO] [stdout] | [INFO] [stdout] 259 | pub pos_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:266:49 [INFO] [stdout] | [INFO] [stdout] 266 | pub fn new(sequence: &str, quantity: usize, pH: Option) -> Self { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `PA` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:267:17 [INFO] [stdout] | [INFO] [stdout] 267 | let mut PA = ProteinAnalysis { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `pa` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:426:12 [INFO] [stdout] | [INFO] [stdout] 426 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:426:40 [INFO] [stdout] | [INFO] [stdout] 426 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:433:22 [INFO] [stdout] | [INFO] [stdout] 433 | for (aa, pK) in &self.pos_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:444:22 [INFO] [stdout] | [INFO] [stdout] 444 | for (aa, pK) in &self.neg_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `pK_table` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:491:8 [INFO] [stdout] | [INFO] [stdout] 491 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `p_k_table` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:493:17 [INFO] [stdout] | [INFO] [stdout] 493 | let pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:494:17 [INFO] [stdout] | [INFO] [stdout] 494 | let neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKnterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:508:21 [INFO] [stdout] | [INFO] [stdout] 508 | let mut pKnterminal = PKNTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_knterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKcterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:509:21 [INFO] [stdout] | [INFO] [stdout] 509 | let mut pKcterminal = PKCTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_kcterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:546:13 [INFO] [stdout] | [INFO] [stdout] 546 | mut pH: Option, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `MW` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:26:9 [INFO] [stdout] | [INFO] [stdout] 26 | pub MW: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `mw` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `AV` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:27:9 [INFO] [stdout] | [INFO] [stdout] 27 | pub AV: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `av` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `IP` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:28:5 [INFO] [stdout] | [INFO] [stdout] 28 | IP: f64, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `ip` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `P` should have a snake case name [INFO] [stdout] --> src/cdr3/cdr3.rs:259:13 [INFO] [stdout] | [INFO] [stdout] 259 | let mut P = ProteinAnalysis::new(sequence, quantity, None); [INFO] [stdout] | ^ help: convert the identifier to snake case: `p` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `H` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:68:13 [INFO] [stdout] | [INFO] [stdout] 68 | let H: HashMap> = [INFO] [stdout] | ^ help: convert the identifier to snake case: `h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:249:9 [INFO] [stdout] | [INFO] [stdout] 249 | pub charge_at_pH: Option, [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:258:9 [INFO] [stdout] | [INFO] [stdout] 258 | pub neg_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: structure field `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:259:9 [INFO] [stdout] | [INFO] [stdout] 259 | pub pos_pKs: HashMap, [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:266:49 [INFO] [stdout] | [INFO] [stdout] 266 | pub fn new(sequence: &str, quantity: usize, pH: Option) -> Self { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `PA` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:267:17 [INFO] [stdout] | [INFO] [stdout] 267 | let mut PA = ProteinAnalysis { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `pa` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `charge_at_pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:426:12 [INFO] [stdout] | [INFO] [stdout] 426 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `charge_at_p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:426:40 [INFO] [stdout] | [INFO] [stdout] 426 | pub fn charge_at_pH(&mut self, mut pH: Option) -> f64 { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:433:22 [INFO] [stdout] | [INFO] [stdout] 433 | for (aa, pK) in &self.pos_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pK` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:444:22 [INFO] [stdout] | [INFO] [stdout] 444 | for (aa, pK) in &self.neg_pKs { [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_k` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `pK_table` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:491:8 [INFO] [stdout] | [INFO] [stdout] 491 | fn pK_table(&mut self) -> (HashMap, HashMap) { [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `p_k_table` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pos_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:493:17 [INFO] [stdout] | [INFO] [stdout] 493 | let pos_pKs: HashMap = POSITIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `pos_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `neg_pKs` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:494:17 [INFO] [stdout] | [INFO] [stdout] 494 | let neg_pKs: HashMap = NEGATIVE_PKS.clone(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `neg_p_ks` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKnterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:508:21 [INFO] [stdout] | [INFO] [stdout] 508 | let mut pKnterminal = PKNTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_knterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pKcterminal` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:509:21 [INFO] [stdout] | [INFO] [stdout] 509 | let mut pKcterminal = PKCTERMINAL.clone(); [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `p_kcterminal` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pH` should have a snake case name [INFO] [stdout] --> src/cdr3/protein_analysis.rs:546:13 [INFO] [stdout] | [INFO] [stdout] 546 | mut pH: Option, [INFO] [stdout] | ^^ help: convert the identifier to snake case: `p_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 26 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 26 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 4.94s [INFO] running `Command { std: "docker" "inspect" "03535687353a3699ecbb9213618bfa09608f73d69b4e6b42396e8e4377f0fa90", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "03535687353a3699ecbb9213618bfa09608f73d69b4e6b42396e8e4377f0fa90", kill_on_drop: false }` [INFO] [stdout] 03535687353a3699ecbb9213618bfa09608f73d69b4e6b42396e8e4377f0fa90