[INFO] cloning repository https://github.com/10XGenomics/vartrix
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/vartrix" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fvartrix", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fvartrix'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] bf8e95056b48779bea13951fddeb2c9c96720f04
[INFO] checking 10XGenomics/vartrix against try#a7a572ce3edd6d476191fbfe92c9c1986e009b34 for pr-87190-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fvartrix" "/workspace/builds/worker-2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/10XGenomics/vartrix on toolchain a7a572ce3edd6d476191fbfe92c9c1986e009b34
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/10XGenomics/vartrix
[INFO] finished tweaking git repo https://github.com/10XGenomics/vartrix
[INFO] tweaked toml for git repo https://github.com/10XGenomics/vartrix written to /workspace/builds/worker-2/source/Cargo.toml
[INFO] crate git repo https://github.com/10XGenomics/vartrix already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bv v0.11.0
[INFO] [stderr]   Downloaded bio-types v0.5.1
[INFO] [stderr]   Downloaded sprs v0.6.5
[INFO] [stderr]   Downloaded bio v0.30.0
[INFO] [stderr]   Downloaded statrs v0.11.0
[INFO] [stderr]   Downloaded fs-utils v1.1.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 1f0028a7ec7716f972f955023aec0e3fb74757483220eb91bac6c042c27c5a44
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "1f0028a7ec7716f972f955023aec0e3fb74757483220eb91bac6c042c27c5a44", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1f0028a7ec7716f972f955023aec0e3fb74757483220eb91bac6c042c27c5a44", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1f0028a7ec7716f972f955023aec0e3fb74757483220eb91bac6c042c27c5a44", kill_on_drop: false }`
[INFO] [stdout] 1f0028a7ec7716f972f955023aec0e3fb74757483220eb91bac6c042c27c5a44
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+a7a572ce3edd6d476191fbfe92c9c1986e009b34" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] f2adaedc151f7ed2ff859b1812f2f2e3843a8b630da823788cd1ac353e7e53fa
[INFO] running `Command { std: "docker" "start" "-a" "f2adaedc151f7ed2ff859b1812f2f2e3843a8b630da823788cd1ac353e7e53fa", kill_on_drop: false }`
[INFO] [stderr] Copying to /tmp/fixit
[INFO] [stderr] Running `cargo fix --edition`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling syn v1.0.11
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]     Checking rand_core v0.4.2
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling quick-error v1.2.2
[INFO] [stderr]     Checking rustc-demangle v0.1.16
[INFO] [stderr]     Checking matches v0.1.8
[INFO] [stderr]     Checking rustc-serialize v0.3.24
[INFO] [stderr]     Checking remove_dir_all v0.5.2
[INFO] [stderr]    Compiling crc32fast v1.2.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]     Checking bit-vec v0.5.1
[INFO] [stderr]     Checking adler32 v1.0.4
[INFO] [stderr]    Compiling bio v0.30.0
[INFO] [stderr]     Checking bytecount v0.6.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking termcolor v0.3.6
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking strum v0.16.0
[INFO] [stderr]     Checking thread_local v0.3.6
[INFO] [stderr]    Compiling num-integer v0.1.41
[INFO] [stderr]    Compiling num-complex v0.2.3
[INFO] [stderr]     Checking itertools v0.7.11
[INFO] [stderr]     Checking itertools v0.8.0
[INFO] [stderr]     Checking itertools v0.6.5
[INFO] [stderr]    Compiling bv v0.11.0
[INFO] [stderr]     Checking c2-chacha v0.2.2
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking unicode-bidi v0.3.4
[INFO] [stderr]     Checking bit-set v0.5.1
[INFO] [stderr]    Compiling fs-utils v1.1.1
[INFO] [stderr]     Checking miniz_oxide v0.3.2
[INFO] [stderr]    Compiling proc-macro2 v1.0.3
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking rand_core v0.3.1
[INFO] [stderr]     Checking rand_jitter v0.1.4
[INFO] [stderr]     Checking getrandom v0.1.12
[INFO] [stderr]     Checking rand_os v0.1.3
[INFO] [stderr]     Checking dirs v1.0.5
[INFO] [stderr]     Checking time v0.1.42
[INFO] [stderr]     Checking atty v0.2.13
[INFO] [stderr]     Checking terminal_size v0.1.8
[INFO] [stderr]    Compiling num_cpus v1.10.1
[INFO] [stderr]    Compiling jobserver v0.1.21
[INFO] [stderr]     Checking regex-automata v0.1.8
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking rand_pcg v0.1.2
[INFO] [stderr]     Checking idna v0.2.0
[INFO] [stderr]     Checking uuid v0.6.5
[INFO] [stderr]     Checking tempdir v0.3.7
[INFO] [stderr]     Checking rand_xorshift v0.1.1
[INFO] [stderr]     Checking rand_chacha v0.1.1
[INFO] [stderr]     Checking rand_isaac v0.1.1
[INFO] [stderr]     Checking rand_hc v0.1.0
[INFO] [stderr]     Checking term v0.5.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v1.0.2
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling cc v1.0.45
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]     Checking flate2 v1.0.11
[INFO] [stderr]     Checking rand v0.6.5
[INFO] [stderr]     Checking chrono v0.4.9
[INFO] [stderr]     Checking crossbeam-epoch v0.7.2
[INFO] [stderr]     Checking rand_chacha v0.2.1
[INFO] [stderr]     Checking aho-corasick v0.7.6
[INFO] [stderr]     Checking csv-core v0.1.6
[INFO] [stderr]     Checking rand v0.7.2
[INFO] [stderr]     Checking url v2.1.1
[INFO] [stderr]     Checking num-complex v0.1.43
[INFO] [stderr]     Checking crossbeam-deque v0.7.1
[INFO] [stderr]     Checking ndarray v0.12.1
[INFO] [stderr]     Checking ndarray v0.13.0
[INFO] [stderr]    Compiling openssl-src v111.10.2+1.1.1g
[INFO] [stderr]     Checking rayon-core v1.6.0
[INFO] [stderr]     Checking alga v0.5.4
[INFO] [stderr]     Checking simplelog v0.5.3
[INFO] [stderr]    Compiling backtrace-sys v0.1.31
[INFO] [stderr]    Compiling openssl-sys v0.9.60
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling hts-sys v1.11.1-fix1
[INFO] [stderr]     Checking statrs v0.11.0
[INFO] [stderr]     Checking rayon v1.2.0
[INFO] [stderr]     Checking regex v1.3.1
[INFO] [stderr]     Checking tempfile v3.1.0
[INFO] [stderr]     Checking backtrace v0.3.37
[INFO] [stderr]     Checking os_type v2.2.0
[INFO] [stderr]    Compiling serde_derive v1.0.101
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling thiserror-impl v1.0.20
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.16.0
[INFO] [stderr]    Compiling synstructure v0.10.2
[INFO] [stderr]     Checking thiserror v1.0.20
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]    Compiling failure_derive v0.1.5
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]     Checking bio-types v0.10.0
[INFO] [stderr]     Checking failure v0.1.5
[INFO] [stderr]     Checking snafu v0.5.0
[INFO] [stderr]     Checking serde v1.0.101
[INFO] [stderr]     Checking bstr v0.2.8
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking toml v0.4.10
[INFO] [stderr]     Checking bio-types v0.5.1
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking sprs v0.6.5
[INFO] [stderr]     Checking clap v2.33.0
[INFO] [stderr]     Checking csv v1.1.1
[INFO] [stderr]     Checking human-panic v1.0.1
[INFO] [stderr]     Checking rust-htslib v0.36.0
[INFO] [stderr]     Checking vartrix v1.1.22 (/tmp/fixit)
[INFO] [stderr]    Migrating src/main.rs from 2018 edition to 2021
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 33s
[INFO] [stderr] Running `cargo check` to verify 2021
[INFO] [stderr]     Checking vartrix v1.1.22 (/tmp/fixit)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1.13s
[INFO] running `Command { std: "docker" "inspect" "f2adaedc151f7ed2ff859b1812f2f2e3843a8b630da823788cd1ac353e7e53fa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f2adaedc151f7ed2ff859b1812f2f2e3843a8b630da823788cd1ac353e7e53fa", kill_on_drop: false }`
[INFO] [stdout] f2adaedc151f7ed2ff859b1812f2f2e3843a8b630da823788cd1ac353e7e53fa