[INFO] fetching crate neuro 0.1.0... [INFO] checking neuro-0.1.0 against master#33fdb797f59421c7bbecaa4588ed5d7a31a9494a for pr-87190-3 [INFO] extracting crate neuro 0.1.0 into /workspace/builds/worker-48/source [INFO] validating manifest of crates.io crate neuro 0.1.0 on toolchain 33fdb797f59421c7bbecaa4588ed5d7a31a9494a [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate neuro 0.1.0 [INFO] finished tweaking crates.io crate neuro 0.1.0 [INFO] tweaked toml for crates.io crate neuro 0.1.0 written to /workspace/builds/worker-48/source/Cargo.toml [INFO] crate crates.io crate neuro 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-48/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-48/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ffcdb64f59b7e7454795f77d5478a1a6479a1120c8d68399c4aefd195a90f587 [INFO] running `Command { std: "docker" "start" "-a" "ffcdb64f59b7e7454795f77d5478a1a6479a1120c8d68399c4aefd195a90f587", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ffcdb64f59b7e7454795f77d5478a1a6479a1120c8d68399c4aefd195a90f587", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ffcdb64f59b7e7454795f77d5478a1a6479a1120c8d68399c4aefd195a90f587", kill_on_drop: false }` [INFO] [stdout] ffcdb64f59b7e7454795f77d5478a1a6479a1120c8d68399c4aefd195a90f587 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-48/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-48/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b26af3ae15e8aff440f918051b919c3b6a7423e4edd5d129874f185948b63314 [INFO] running `Command { std: "docker" "start" "-a" "b26af3ae15e8aff440f918051b919c3b6a7423e4edd5d129874f185948b63314", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking rand_core v0.4.2 [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Compiling cc v1.0.50 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling regex-syntax v0.6.14 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Compiling rayon-core v1.7.0 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling itoa v0.4.5 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Checking lzw v0.10.0 [INFO] [stderr] Checking color_quant v1.0.1 [INFO] [stderr] Checking ascii v0.9.3 [INFO] [stderr] Checking scoped_threadpool v0.1.9 [INFO] [stderr] Checking bytemuck v1.2.0 [INFO] [stderr] Checking number_prefix v0.3.0 [INFO] [stderr] Checking same-file v1.0.6 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-bigint v0.2.6 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-rational v0.2.3 [INFO] [stderr] Compiling num-iter v0.1.40 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking inflate v0.4.5 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking miniz_oxide v0.3.6 [INFO] [stderr] Checking crc32fast v1.2.0 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Checking lock_api v0.2.0 [INFO] [stderr] Checking rand_core v0.3.1 [INFO] [stderr] Checking rand_jitter v0.1.4 [INFO] [stderr] Checking gif v0.10.3 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Checking walkdir v2.3.1 [INFO] [stderr] Checking smallvec v0.6.13 [INFO] [stderr] Checking rand_hc v0.1.0 [INFO] [stderr] Checking rand_xorshift v0.1.1 [INFO] [stderr] Checking rand_isaac v0.1.1 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Checking deflate v0.7.20 [INFO] [stderr] Checking regex-automata v0.1.8 [INFO] [stderr] Checking tiff v0.4.0 [INFO] [stderr] Checking aho-corasick v0.7.9 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Checking num_cpus v1.12.0 [INFO] [stderr] Checking termios v0.3.1 [INFO] [stderr] Checking clicolors-control v1.0.1 [INFO] [stderr] Checking hdf5-types v0.6.0 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Checking png v0.15.3 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking crossbeam-queue v0.2.1 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling memoffset v0.5.3 [INFO] [stderr] Compiling parking_lot_core v0.5.0 [INFO] [stderr] Compiling parking_lot v0.8.0 [INFO] [stderr] Checking rand_chacha v0.2.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking regex v1.3.4 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking rayon v1.3.0 [INFO] [stderr] Checking console v0.9.2 [INFO] [stderr] Checking indicatif v0.14.0 [INFO] [stderr] Checking num v0.2.1 [INFO] [stderr] Checking bstr v0.2.11 [INFO] [stderr] Compiling serde_json v1.0.48 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Compiling hdf5-derive v0.6.0 [INFO] [stderr] Checking jpeg-decoder v0.1.18 [INFO] [stderr] Compiling hdf5-sys v0.6.0 [INFO] [stderr] Checking image v0.23.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.6.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-6d1a09838ac1c78e/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x555f1f07a23c - std::backtrace_rs::backtrace::libunwind::trace::ha21b6ba3016b6364 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x555f1f07a23c - std::backtrace_rs::backtrace::trace_unsynchronized::hf515241a118c4e5a [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x555f1f07a23c - std::sys_common::backtrace::_print_fmt::h339cd474d88b8467 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x555f1f07a23c - ::fmt::h06b8f714a0700be1 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x555f1f097b5c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/fmt/mod.rs:1117:17 [INFO] [stderr] 5: 0x555f1f077505 - std::io::Write::write_fmt::hb1c61d571fcd8cbf [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x555f1f07bc90 - std::sys_common::backtrace::_print::hcd1fe1237ea0c752 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x555f1f07bc90 - std::sys_common::backtrace::print::hae7d6625a78cd32e [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x555f1f07bc90 - std::panicking::default_hook::{{closure}}::h9a7fffa4e6b396ed [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x555f1f07b84b - std::panicking::default_hook::h5dc58e323cddd123 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x555f1f07c344 - std::panicking::rust_panic_with_hook::hbef17e4338d7de57 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x555f1eea3d62 - std::panicking::begin_panic::{{closure}}::hd7d2d162bef69d20 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:544:9 [INFO] [stderr] 12: 0x555f1ee9d0c9 - std::sys_common::backtrace::__rust_end_short_backtrace::h96d046298b1e28f0 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x555f1eea3ca3 - std::panicking::begin_panic::he40f513d7c1a47a6 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:543:12 [INFO] [stderr] 14: 0x555f1ee78ee7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h52db2394a0db5922 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:527:13 [INFO] [stderr] 15: 0x555f1ee7a15b - build_script_build::main::h28d895d1712ab935 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.6.0/build.rs:605:5 [INFO] [stderr] 16: 0x555f1ee7c36b - core::ops::function::FnOnce::call_once::h3f7b7dcd8a008f9b [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x555f1ee827de - std::sys_common::backtrace::__rust_begin_short_backtrace::h8a776fdd9c2feb68 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x555f1ee7f121 - std::rt::lang_start::{{closure}}::h51e46cd776232593 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/rt.rs:63:18 [INFO] [stderr] 19: 0x555f1f07c84a - core::ops::function::impls:: for &F>::call_once::hc9bc8961e4809a14 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x555f1f07c84a - std::panicking::try::do_call::h6f00e12df2af6579 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:403:40 [INFO] [stderr] 21: 0x555f1f07c84a - std::panicking::try::h588c31a0a9a8ad2c [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:367:19 [INFO] [stderr] 22: 0x555f1f07c84a - std::panic::catch_unwind::h8ebc4fcb0e51bec0 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panic.rs:129:14 [INFO] [stderr] 23: 0x555f1f07c84a - std::rt::lang_start_internal::{{closure}}::had93e50fbfd893a1 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/rt.rs:45:48 [INFO] [stderr] 24: 0x555f1f07c84a - std::panicking::try::do_call::hf70c5056d8b410b7 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:403:40 [INFO] [stderr] 25: 0x555f1f07c84a - std::panicking::try::h0c680320de5deb84 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:367:19 [INFO] [stderr] 26: 0x555f1f07c84a - std::panic::catch_unwind::h7b94a99f13366c53 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panic.rs:129:14 [INFO] [stderr] 27: 0x555f1f07c84a - std::rt::lang_start_internal::hca14fb2549072049 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/rt.rs:45:20 [INFO] [stderr] 28: 0x555f1ee7f0f0 - std::rt::lang_start::h4d9d5a78ad638b1d [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/rt.rs:62:5 [INFO] [stderr] 29: 0x555f1ee7ab4c - main [INFO] [stderr] 30: 0x7fc172b450b3 - __libc_start_main [INFO] [stderr] 31: 0x555f1ee74eee - _start [INFO] [stderr] 32: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "b26af3ae15e8aff440f918051b919c3b6a7423e4edd5d129874f185948b63314", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b26af3ae15e8aff440f918051b919c3b6a7423e4edd5d129874f185948b63314", kill_on_drop: false }` [INFO] [stdout] b26af3ae15e8aff440f918051b919c3b6a7423e4edd5d129874f185948b63314