[INFO] fetching crate librna-sys 0.1.2... [INFO] checking librna-sys-0.1.2 against master#33fdb797f59421c7bbecaa4588ed5d7a31a9494a for pr-87190-3 [INFO] extracting crate librna-sys 0.1.2 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate librna-sys 0.1.2 on toolchain 33fdb797f59421c7bbecaa4588ed5d7a31a9494a [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate librna-sys 0.1.2 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate librna-sys 0.1.2 [INFO] tweaked toml for crates.io crate librna-sys 0.1.2 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate crates.io crate librna-sys 0.1.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 18ac6d6b0739a8e4a16ec84049a2a36d4cea9e17293a0cf9e69514d12605d60a [INFO] running `Command { std: "docker" "start" "-a" "18ac6d6b0739a8e4a16ec84049a2a36d4cea9e17293a0cf9e69514d12605d60a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "18ac6d6b0739a8e4a16ec84049a2a36d4cea9e17293a0cf9e69514d12605d60a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "18ac6d6b0739a8e4a16ec84049a2a36d4cea9e17293a0cf9e69514d12605d60a", kill_on_drop: false }` [INFO] [stdout] 18ac6d6b0739a8e4a16ec84049a2a36d4cea9e17293a0cf9e69514d12605d60a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0f56ba7751f11858675f568239c02adec5482be45bb53767fcb425686a24eb33 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "0f56ba7751f11858675f568239c02adec5482be45bb53767fcb425686a24eb33", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.19 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.41 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling shlex v1.0.0 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling pyo3 v0.13.2 [INFO] [stderr] Compiling clang-sys v1.0.0 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking lock_api v0.4.4 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Checking instant v0.1.9 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Checking parking_lot_core v0.8.3 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling bindgen v0.58.1 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling env_logger v0.8.3 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling pyo3-macros-backend v0.13.2 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling inventory-impl v0.1.10 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling ctor v0.1.16 [INFO] [stderr] Compiling pyo3-macros v0.13.2 [INFO] [stderr] Checking inventory v0.1.10 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Compiling librna-sys v0.1.2 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: LIBRNA_INCLUDE_DIR not set. [INFO] [stderr] warning: Using LIBRNA_INCLUDE_DIR=/usr/include as default. [INFO] [stderr] warning: LIBRNA_LIB_DIR not set. [INFO] [stderr] warning: Using LIBRNA_LIB_DIR=/usr/lib as default. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `librna-sys v0.1.2 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/librna-sys-5a1b1b48ca388068/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=LIBRNA_INCLUDE_DIR not set. [INFO] [stderr] cargo:warning=Using LIBRNA_INCLUDE_DIR=/usr/include as default. [INFO] [stderr] cargo:include=/usr/include [INFO] [stderr] cargo:warning=LIBRNA_LIB_DIR not set. [INFO] [stderr] cargo:warning=Using LIBRNA_LIB_DIR=/usr/lib as default. [INFO] [stderr] cargo:rustc-link-search=native=/usr/lib [INFO] [stderr] cargo:rustc-link-lib=static=RNA [INFO] [stderr] cargo:rerun-if-changed=src/wrapper.h [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] src/wrapper.h:1:10: fatal error: 'ViennaRNA/2Dfold.h' file not found [INFO] [stderr] src/wrapper.h:1:10: fatal error: 'ViennaRNA/2Dfold.h' file not found, err: true [INFO] [stderr] thread 'main' panicked at 'Unable to generate bindings: ()', src/build.rs:72:10 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5555d0ace82c - std::backtrace_rs::backtrace::libunwind::trace::ha21b6ba3016b6364 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x5555d0ace82c - std::backtrace_rs::backtrace::trace_unsynchronized::hf515241a118c4e5a [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5555d0ace82c - std::sys_common::backtrace::_print_fmt::h339cd474d88b8467 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5555d0ace82c - ::fmt::h06b8f714a0700be1 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5555d0af23dc - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/fmt/mod.rs:1117:17 [INFO] [stderr] 5: 0x5555d0acb675 - std::io::Write::write_fmt::hb1c61d571fcd8cbf [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x5555d0ad0590 - std::sys_common::backtrace::_print::hcd1fe1237ea0c752 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5555d0ad0590 - std::sys_common::backtrace::print::hae7d6625a78cd32e [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5555d0ad0590 - std::panicking::default_hook::{{closure}}::h9a7fffa4e6b396ed [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x5555d0ad014b - std::panicking::default_hook::h5dc58e323cddd123 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x5555d0ad0c44 - std::panicking::rust_panic_with_hook::hbef17e4338d7de57 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x5555d0ad0720 - std::panicking::begin_panic_handler::{{closure}}::hd8a92a4b1c3baae0 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:521:13 [INFO] [stderr] 12: 0x5555d0acecf4 - std::sys_common::backtrace::__rust_end_short_backtrace::ha5ac263a7609ace8 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5555d0ad0689 - rust_begin_unwind [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:517:5 [INFO] [stderr] 14: 0x5555d059f8f1 - core::panicking::panic_fmt::hcf5f6d96e1dd7099 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/panicking.rs:93:14 [INFO] [stderr] 15: 0x5555d059f9e3 - core::result::unwrap_failed::he898b02f57993c42 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/result.rs:1617:5 [INFO] [stderr] 16: 0x5555d05a5bb5 - core::result::Result::expect::h147c7e5e0bd31f29 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/result.rs:1259:23 [INFO] [stderr] 17: 0x5555d05a3c8a - build_script_build::main::h4c11dc800a334ca6 [INFO] [stderr] at /opt/rustwide/workdir/src/build.rs:67:20 [INFO] [stderr] 18: 0x5555d05a590b - core::ops::function::FnOnce::call_once::hd9c720e196c033b2 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x5555d05a581e - std::sys_common::backtrace::__rust_begin_short_backtrace::h893415e08f350942 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x5555d05a5631 - std::rt::lang_start::{{closure}}::h5fa33a63a1798fbd [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/rt.rs:63:18 [INFO] [stderr] 21: 0x5555d0ad124a - core::ops::function::impls:: for &F>::call_once::hc9bc8961e4809a14 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x5555d0ad124a - std::panicking::try::do_call::h6f00e12df2af6579 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:403:40 [INFO] [stderr] 23: 0x5555d0ad124a - std::panicking::try::h588c31a0a9a8ad2c [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:367:19 [INFO] [stderr] 24: 0x5555d0ad124a - std::panic::catch_unwind::h8ebc4fcb0e51bec0 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panic.rs:129:14 [INFO] [stderr] 25: 0x5555d0ad124a - std::rt::lang_start_internal::{{closure}}::had93e50fbfd893a1 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/rt.rs:45:48 [INFO] [stderr] 26: 0x5555d0ad124a - std::panicking::try::do_call::hf70c5056d8b410b7 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:403:40 [INFO] [stderr] 27: 0x5555d0ad124a - std::panicking::try::h0c680320de5deb84 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:367:19 [INFO] [stderr] 28: 0x5555d0ad124a - std::panic::catch_unwind::h7b94a99f13366c53 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panic.rs:129:14 [INFO] [stderr] 29: 0x5555d0ad124a - std::rt::lang_start_internal::hca14fb2549072049 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/rt.rs:45:20 [INFO] [stderr] 30: 0x5555d05a5600 - std::rt::lang_start::h4167440c3844c086 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/rt.rs:62:5 [INFO] [stderr] 31: 0x5555d05a3eec - main [INFO] [stderr] 32: 0x7f5480a7f0b3 - __libc_start_main [INFO] [stderr] 33: 0x5555d05a00ee - _start [INFO] [stderr] 34: 0x0 - [INFO] running `Command { std: "docker" "inspect" "0f56ba7751f11858675f568239c02adec5482be45bb53767fcb425686a24eb33", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0f56ba7751f11858675f568239c02adec5482be45bb53767fcb425686a24eb33", kill_on_drop: false }` [INFO] [stdout] 0f56ba7751f11858675f568239c02adec5482be45bb53767fcb425686a24eb33