[INFO] fetching crate gchemol-geometry 0.0.39... [INFO] checking gchemol-geometry-0.0.39 against master#33fdb797f59421c7bbecaa4588ed5d7a31a9494a for pr-87190-3 [INFO] extracting crate gchemol-geometry 0.0.39 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate gchemol-geometry 0.0.39 on toolchain 33fdb797f59421c7bbecaa4588ed5d7a31a9494a [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate gchemol-geometry 0.0.39 [INFO] finished tweaking crates.io crate gchemol-geometry 0.0.39 [INFO] tweaked toml for crates.io crate gchemol-geometry 0.0.39 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] f02d45736607418261d5d2db2cc3c6fd01eb0f9251480b3ba11d85e14bc2cbab [INFO] running `Command { std: "docker" "start" "-a" "f02d45736607418261d5d2db2cc3c6fd01eb0f9251480b3ba11d85e14bc2cbab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f02d45736607418261d5d2db2cc3c6fd01eb0f9251480b3ba11d85e14bc2cbab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f02d45736607418261d5d2db2cc3c6fd01eb0f9251480b3ba11d85e14bc2cbab", kill_on_drop: false }` [INFO] [stdout] f02d45736607418261d5d2db2cc3c6fd01eb0f9251480b3ba11d85e14bc2cbab [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] f8028e8c6880f6824c8b5941e477a882698032dd0f7f134b497dbf29175b6840 [INFO] running `Command { std: "docker" "start" "-a" "f8028e8c6880f6824c8b5941e477a882698032dd0f7f134b497dbf29175b6840", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.75 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling anyhow v1.0.43 [INFO] [stderr] Checking regex-syntax v0.6.25 [INFO] [stderr] Checking os_str_bytes v3.1.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-rational v0.2.4 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Checking textwrap v0.14.2 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Checking crossbeam-utils v0.8.5 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking getrandom v0.2.3 [INFO] [stderr] Checking os_pipe v0.9.2 [INFO] [stderr] Checking shared_child v0.3.5 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking duct v0.13.5 [INFO] [stderr] Checking rand_core v0.6.3 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking crossbeam-epoch v0.9.5 [INFO] [stderr] Checking crossbeam-channel v0.5.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking crossbeam-deque v0.8.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking rand v0.8.4 [INFO] [stderr] Checking rayon-core v1.9.1 [INFO] [stderr] Checking regex v1.5.4 [INFO] [stderr] Checking rand_distr v0.2.2 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking tempfile v3.2.0 [INFO] [stderr] Checking env_logger v0.9.0 [INFO] [stderr] Compiling serde_derive v1.0.128 [INFO] [stderr] Compiling structopt-derive v0.4.15 [INFO] [stderr] Compiling clap_derive v3.0.0-beta.4 [INFO] [stderr] Checking structopt v0.3.22 [INFO] [stderr] Checking clap v3.0.0-beta.4 [INFO] [stderr] Checking serde v1.0.128 [INFO] [stderr] Checking toml v0.5.8 [INFO] [stderr] Checking serde_json v1.0.66 [INFO] [stderr] Checking alga v0.9.3 [INFO] [stderr] Checking gchemol-gut v0.1.7 [INFO] [stderr] Checking nalgebra v0.20.0 [INFO] [stderr] Checking vecfx v0.1.2 [INFO] [stderr] Checking gchemol-geometry v0.0.39 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `crate::base::euclidean_distance` [INFO] [stdout] --> src/random.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use crate::base::euclidean_distance; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `prepare_test_data` [INFO] [stdout] --> src/alignment/qcprot.rs:460:15 [INFO] [stdout] | [INFO] [stdout] 460 | pub(crate) fn prepare_test_data() -> (Vec<[f64; 3]>, Vec<[f64; 3]>, Vec) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `euclidean_distance` [INFO] [stdout] --> src/base.rs:13:8 [INFO] [stdout] | [INFO] [stdout] 13 | pub fn euclidean_distance(p1: [f64; 3], p2: [f64; 3]) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `weighted_center_of_geometry` [INFO] [stdout] --> src/base.rs:24:8 [INFO] [stdout] | [INFO] [stdout] 24 | pub fn weighted_center_of_geometry(positions: &[[f64; 3]], weights: &[f64]) -> Result { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias is never used: `Point3D` [INFO] [stdout] --> src/random.rs:17:1 [INFO] [stdout] | [INFO] [stdout] 17 | type Point3D = [f64; 3]; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias is never used: `Points` [INFO] [stdout] --> src/random.rs:18:1 [INFO] [stdout] | [INFO] [stdout] 18 | type Points = Vec; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `rand_point_within_sphere` [INFO] [stdout] --> src/random.rs:24:8 [INFO] [stdout] | [INFO] [stdout] 24 | pub fn rand_point_within_sphere(radius: f64) -> Point3D { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `rand_point_on_sphere` [INFO] [stdout] --> src/random.rs:49:8 [INFO] [stdout] | [INFO] [stdout] 49 | pub fn rand_point_on_sphere(radius: f64) -> Point3D { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `rand_points_within_sphere` [INFO] [stdout] --> src/random.rs:76:8 [INFO] [stdout] | [INFO] [stdout] 76 | pub fn rand_points_within_sphere(radius: f64, npts: usize) -> Points { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `rand_rotate` [INFO] [stdout] --> src/random.rs:102:8 [INFO] [stdout] | [INFO] [stdout] 102 | pub fn rand_rotate(points: &Points) -> Points { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias is never used: `Point3` [INFO] [stdout] --> src/transform.rs:15:1 [INFO] [stdout] | [INFO] [stdout] 15 | type Point3 = [f64; 3]; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias is never used: `Points` [INFO] [stdout] --> src/transform.rs:16:1 [INFO] [stdout] | [INFO] [stdout] 16 | type Points = Vec; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `translate` [INFO] [stdout] --> src/transform.rs:19:8 [INFO] [stdout] | [INFO] [stdout] 19 | pub fn translate(points: &mut Points, loc: Point3) { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `close_contact` [INFO] [stdout] --> src/transform.rs:28:8 [INFO] [stdout] | [INFO] [stdout] 28 | pub fn close_contact(points: &Points) -> bool { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `get_distance_matrix` [INFO] [stdout] --> src/transform.rs:50:8 [INFO] [stdout] | [INFO] [stdout] 50 | pub fn get_distance_matrix(points: &[Point3]) -> Vec> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `rotate_about_x_axis` [INFO] [stdout] --> src/transform.rs:68:8 [INFO] [stdout] | [INFO] [stdout] 68 | pub fn rotate_about_x_axis(points: &Points, angle: f64, center: Point3) -> Points { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `mirror_invert` [INFO] [stdout] --> src/transform.rs:84:8 [INFO] [stdout] | [INFO] [stdout] 84 | pub fn mirror_invert(positions: &[[f64; 3]]) -> Vector3fVec { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `point_invert` [INFO] [stdout] --> src/transform.rs:91:8 [INFO] [stdout] | [INFO] [stdout] 91 | pub fn point_invert(positions: &[[f64; 3]]) -> Vector3fVec { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 18 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `trans` [INFO] [stdout] --> src/alignment/qcprot.rs:491:16 [INFO] [stdout] | [INFO] [stdout] 491 | let (rmsd, trans, rot) = calc_rmsd_rotational_matrix(&mut frag_a, &mut frag_b, Some(&weights)); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trans` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `rand_point_within_sphere` [INFO] [stdout] --> src/random.rs:24:8 [INFO] [stdout] | [INFO] [stdout] 24 | pub fn rand_point_within_sphere(radius: f64) -> Point3D { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `rand_points_within_sphere` [INFO] [stdout] --> src/random.rs:76:8 [INFO] [stdout] | [INFO] [stdout] 76 | pub fn rand_points_within_sphere(radius: f64, npts: usize) -> Points { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `translate` [INFO] [stdout] --> src/transform.rs:19:8 [INFO] [stdout] | [INFO] [stdout] 19 | pub fn translate(points: &mut Points, loc: Point3) { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `close_contact` [INFO] [stdout] --> src/transform.rs:28:8 [INFO] [stdout] | [INFO] [stdout] 28 | pub fn close_contact(points: &Points) -> bool { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `get_distance_matrix` [INFO] [stdout] --> src/transform.rs:50:8 [INFO] [stdout] | [INFO] [stdout] 50 | pub fn get_distance_matrix(points: &[Point3]) -> Vec> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `mirror_invert` [INFO] [stdout] --> src/transform.rs:84:8 [INFO] [stdout] | [INFO] [stdout] 84 | pub fn mirror_invert(positions: &[[f64; 3]]) -> Vector3fVec { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `point_invert` [INFO] [stdout] --> src/transform.rs:91:8 [INFO] [stdout] | [INFO] [stdout] 91 | pub fn point_invert(positions: &[[f64; 3]]) -> Vector3fVec { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 8 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 30s [INFO] running `Command { std: "docker" "inspect" "f8028e8c6880f6824c8b5941e477a882698032dd0f7f134b497dbf29175b6840", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f8028e8c6880f6824c8b5941e477a882698032dd0f7f134b497dbf29175b6840", kill_on_drop: false }` [INFO] [stdout] f8028e8c6880f6824c8b5941e477a882698032dd0f7f134b497dbf29175b6840