[INFO] cloning repository https://github.com/guertinlab/kmer_mask_em
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/guertinlab/kmer_mask_em" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2Fkmer_mask_em", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2Fkmer_mask_em'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] c1ae4fc642bd6330c9db7a4cf31f9b304ff6a874
[INFO] checking guertinlab/kmer_mask_em against master#33fdb797f59421c7bbecaa4588ed5d7a31a9494a for pr-87190-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2Fkmer_mask_em" "/workspace/builds/worker-44/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-44/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/guertinlab/kmer_mask_em on toolchain 33fdb797f59421c7bbecaa4588ed5d7a31a9494a
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/guertinlab/kmer_mask_em
[INFO] finished tweaking git repo https://github.com/guertinlab/kmer_mask_em
[INFO] tweaked toml for git repo https://github.com/guertinlab/kmer_mask_em written to /workspace/builds/worker-44/source/Cargo.toml
[INFO] crate git repo https://github.com/guertinlab/kmer_mask_em already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded docopt v0.7.0
[INFO] [stderr]   Downloaded tabwriter v1.0.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-44/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-44/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a6e766bd84d98259e9ea58cad0bcece9dd5927834d36ce85d249a1c73795457b
[INFO] running `Command { std: "docker" "start" "-a" "a6e766bd84d98259e9ea58cad0bcece9dd5927834d36ce85d249a1c73795457b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a6e766bd84d98259e9ea58cad0bcece9dd5927834d36ce85d249a1c73795457b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a6e766bd84d98259e9ea58cad0bcece9dd5927834d36ce85d249a1c73795457b", kill_on_drop: false }`
[INFO] [stdout] a6e766bd84d98259e9ea58cad0bcece9dd5927834d36ce85d249a1c73795457b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-44/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-44/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] cafc8af14a16559e6c94e77f30eb6a2e175a7c4b3fba6bf66ad9b15f7b99a516
[INFO] running `Command { std: "docker" "start" "-a" "cafc8af14a16559e6c94e77f30eb6a2e175a7c4b3fba6bf66ad9b15f7b99a516", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Checking libc v0.2.21
[INFO] [stderr]     Checking void v1.0.2
[INFO] [stderr]     Checking regex-syntax v0.4.0
[INFO] [stderr]     Checking utf8-ranges v1.0.0
[INFO] [stderr]     Checking unicode-width v0.1.4
[INFO] [stderr]     Checking rustc-serialize v0.3.23
[INFO] [stderr]     Checking lazy_static v0.2.4
[INFO] [stderr]     Checking strsim v0.6.0
[INFO] [stderr]     Checking unreachable v0.1.1
[INFO] [stderr]     Checking tabwriter v1.0.3
[INFO] [stderr]     Checking thread-id v3.0.0
[INFO] [stderr]     Checking memchr v1.0.1
[INFO] [stderr]     Checking rand v0.3.15
[INFO] [stderr]     Checking num_cpus v1.3.0
[INFO] [stderr]     Checking thread_local v0.3.3
[INFO] [stderr]     Checking aho-corasick v0.6.3
[INFO] [stderr]     Checking deque v0.3.1
[INFO] [stderr]     Checking regex v0.2.1
[INFO] [stderr]     Checking rayon v0.6.0
[INFO] [stderr]     Checking docopt v0.7.0
[INFO] [stderr]     Checking kmermask_em v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]    --> src/main.rs:429:17
[INFO] [stdout]     |
[INFO] [stdout] 429 | #[derive(Debug, RustcDecodable)]
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `RustcDecodable`: rustc-serialize is deprecated and no longer supported
[INFO] [stdout]    --> src/main.rs:429:17
[INFO] [stdout]     |
[INFO] [stdout] 429 | #[derive(Debug, RustcDecodable)]
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 4.35s
[INFO] running `Command { std: "docker" "inspect" "cafc8af14a16559e6c94e77f30eb6a2e175a7c4b3fba6bf66ad9b15f7b99a516", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cafc8af14a16559e6c94e77f30eb6a2e175a7c4b3fba6bf66ad9b15f7b99a516", kill_on_drop: false }`
[INFO] [stdout] cafc8af14a16559e6c94e77f30eb6a2e175a7c4b3fba6bf66ad9b15f7b99a516