[INFO] cloning repository https://github.com/Axect/Galmorph [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Axect/Galmorph" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAxect%2FGalmorph", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAxect%2FGalmorph'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 21de14073b013984b7f1daaaffb0d32e045eddb8 [INFO] checking Axect/Galmorph against master#33fdb797f59421c7bbecaa4588ed5d7a31a9494a for pr-87190-3 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAxect%2FGalmorph" "/workspace/builds/worker-2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Axect/Galmorph on toolchain 33fdb797f59421c7bbecaa4588ed5d7a31a9494a [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Axect/Galmorph [INFO] finished tweaking git repo https://github.com/Axect/Galmorph [INFO] tweaked toml for git repo https://github.com/Axect/Galmorph written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate git repo https://github.com/Axect/Galmorph already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 375131f6dc50d7d665114436a94ddf3b7c5df98bf6390da0b5fce7baa9b9d7d3 [INFO] running `Command { std: "docker" "start" "-a" "375131f6dc50d7d665114436a94ddf3b7c5df98bf6390da0b5fce7baa9b9d7d3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "375131f6dc50d7d665114436a94ddf3b7c5df98bf6390da0b5fce7baa9b9d7d3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "375131f6dc50d7d665114436a94ddf3b7c5df98bf6390da0b5fce7baa9b9d7d3", kill_on_drop: false }` [INFO] [stdout] 375131f6dc50d7d665114436a94ddf3b7c5df98bf6390da0b5fce7baa9b9d7d3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] fb480391dc4d459383602d3a0c5674d5e07974b45a60228ec28cd33119cf24e4 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "fb480391dc4d459383602d3a0c5674d5e07974b45a60228ec28cd33119cf24e4", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.79 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling pkg-config v0.3.18 [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Compiling regex-syntax v0.6.19 [INFO] [stderr] Compiling cc v1.0.61 [INFO] [stderr] Compiling serde v1.0.116 [INFO] [stderr] Compiling netcdf-sys v0.3.2 [INFO] [stderr] Compiling peroxide v0.27.0 [INFO] [stderr] Compiling puruda-macro v0.1.1 [INFO] [stderr] Compiling peroxide-ad v0.1.4 [INFO] [stderr] Checking order-stat v0.1.3 [INFO] [stderr] Checking json v0.12.4 [INFO] [stderr] Checking puruspe v0.1.4 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling libloading v0.6.4 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Compiling fitsio-sys v0.3.0 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Checking getrandom v0.1.15 [INFO] [stderr] Checking lapack-sys v0.12.1 [INFO] [stderr] Checking blas-sys v0.7.1 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking fitsio v0.16.0 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking blas v0.20.0 [INFO] [stderr] Checking lapack v0.16.0 [INFO] [stderr] Checking rand_distr v0.3.0 [INFO] [stderr] Compiling regex v1.4.0 [INFO] [stderr] Checking bstr v0.2.13 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Checking puruda v0.1.0 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-1b82368188b325d4/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x564907061fdc - std::backtrace_rs::backtrace::libunwind::trace::ha21b6ba3016b6364 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x564907061fdc - std::backtrace_rs::backtrace::trace_unsynchronized::hf515241a118c4e5a [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x564907061fdc - std::sys_common::backtrace::_print_fmt::h339cd474d88b8467 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x564907061fdc - ::fmt::h06b8f714a0700be1 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x56490707f9ec - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/fmt/mod.rs:1117:17 [INFO] [stderr] 5: 0x56490705f2a5 - std::io::Write::write_fmt::hb1c61d571fcd8cbf [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x564907063a30 - std::sys_common::backtrace::_print::hcd1fe1237ea0c752 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x564907063a30 - std::sys_common::backtrace::print::hae7d6625a78cd32e [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x564907063a30 - std::panicking::default_hook::{{closure}}::h9a7fffa4e6b396ed [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x5649070635eb - std::panicking::default_hook::h5dc58e323cddd123 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x5649070640e4 - std::panicking::rust_panic_with_hook::hbef17e4338d7de57 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x564906e8cd12 - std::panicking::begin_panic::{{closure}}::hae8ba9ee6dd0e006 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:544:9 [INFO] [stderr] 12: 0x564906e881f9 - std::sys_common::backtrace::__rust_end_short_backtrace::hffa0f346bf0114e5 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x564906e8cc53 - std::panicking::begin_panic::h21da261340715c99 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:543:12 [INFO] [stderr] 14: 0x564906e5dbd7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::hf37901ca88cffe18 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x564906e5f3a7 - build_script_build::main::h661ccf3efde73ffd [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x564906e62a3b - core::ops::function::FnOnce::call_once::h017f1430ac90ee58 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x564906e69a5e - std::sys_common::backtrace::__rust_begin_short_backtrace::h1892f4fce83cbe4b [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x564906e67141 - std::rt::lang_start::{{closure}}::h0fe2a056af3877ce [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/rt.rs:63:18 [INFO] [stderr] 19: 0x5649070645ea - core::ops::function::impls:: for &F>::call_once::hc9bc8961e4809a14 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x5649070645ea - std::panicking::try::do_call::h6f00e12df2af6579 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:403:40 [INFO] [stderr] 21: 0x5649070645ea - std::panicking::try::h588c31a0a9a8ad2c [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:367:19 [INFO] [stderr] 22: 0x5649070645ea - std::panic::catch_unwind::h8ebc4fcb0e51bec0 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panic.rs:129:14 [INFO] [stderr] 23: 0x5649070645ea - std::rt::lang_start_internal::{{closure}}::had93e50fbfd893a1 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/rt.rs:45:48 [INFO] [stderr] 24: 0x5649070645ea - std::panicking::try::do_call::hf70c5056d8b410b7 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:403:40 [INFO] [stderr] 25: 0x5649070645ea - std::panicking::try::h0c680320de5deb84 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:367:19 [INFO] [stderr] 26: 0x5649070645ea - std::panic::catch_unwind::h7b94a99f13366c53 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panic.rs:129:14 [INFO] [stderr] 27: 0x5649070645ea - std::rt::lang_start_internal::hca14fb2549072049 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/rt.rs:45:20 [INFO] [stderr] 28: 0x564906e67110 - std::rt::lang_start::ha016cf921a3679c6 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/rt.rs:62:5 [INFO] [stderr] 29: 0x564906e6085c - main [INFO] [stderr] 30: 0x7f0a811640b3 - __libc_start_main [INFO] [stderr] 31: 0x564906e58ede - _start [INFO] [stderr] 32: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "fb480391dc4d459383602d3a0c5674d5e07974b45a60228ec28cd33119cf24e4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fb480391dc4d459383602d3a0c5674d5e07974b45a60228ec28cd33119cf24e4", kill_on_drop: false }` [INFO] [stdout] fb480391dc4d459383602d3a0c5674d5e07974b45a60228ec28cd33119cf24e4