[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 163ae6a7bcd4b7a0141cbf089c86c59c599b30ce [INFO] checking 38/pyd4 against master#33fdb797f59421c7bbecaa4588ed5d7a31a9494a for pr-87190-3 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-0/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain 33fdb797f59421c7bbecaa4588ed5d7a31a9494a [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 26cf1d1f343e7d269948bca44bcd7695cd008f40b03db4f67a5e9048896eb96f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "26cf1d1f343e7d269948bca44bcd7695cd008f40b03db4f67a5e9048896eb96f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "26cf1d1f343e7d269948bca44bcd7695cd008f40b03db4f67a5e9048896eb96f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "26cf1d1f343e7d269948bca44bcd7695cd008f40b03db4f67a5e9048896eb96f", kill_on_drop: false }` [INFO] [stdout] 26cf1d1f343e7d269948bca44bcd7695cd008f40b03db4f67a5e9048896eb96f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+33fdb797f59421c7bbecaa4588ed5d7a31a9494a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 8f76092f3113ecc945102d82fb432d2688906b45145ded0dbf78955396023088 [INFO] running `Command { std: "docker" "start" "-a" "8f76092f3113ecc945102d82fb432d2688906b45145ded0dbf78955396023088", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.28 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling proc-macro-hack v0.5.19 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling serde_derive v1.0.127 [INFO] [stderr] Compiling serde_json v1.0.66 [INFO] [stderr] Compiling unindent v0.1.7 [INFO] [stderr] Compiling inventory v0.1.10 [INFO] [stderr] Compiling pyo3 v0.12.4 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Checking itoa v0.4.7 [INFO] [stderr] Checking lock_api v0.4.4 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Checking instant v0.1.10 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Checking getrandom v0.1.16 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Checking parking_lot_core v0.8.3 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Checking crossbeam-channel v0.5.1 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Checking crossbeam-deque v0.8.1 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking flate2 v1.0.20 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Checking d4-framefile v0.1.18 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling pyo3-derive-backend v0.12.4 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling inventory-impl v0.1.10 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling ctor v0.1.20 [INFO] [stderr] Compiling pyo3cls v0.12.4 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Compiling d4-hts v0.1.18 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.18` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-5f710dac87a20570/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-76cff53fe2444096/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-76cff53fe2444096/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.18/build.rs:33:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55a2bc83e95c - std::backtrace_rs::backtrace::libunwind::trace::ha21b6ba3016b6364 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55a2bc83e95c - std::backtrace_rs::backtrace::trace_unsynchronized::hf515241a118c4e5a [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55a2bc83e95c - std::sys_common::backtrace::_print_fmt::h339cd474d88b8467 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55a2bc83e95c - ::fmt::h06b8f714a0700be1 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55a2bc86283c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/fmt/mod.rs:1117:17 [INFO] [stderr] 5: 0x55a2bc83b5c5 - std::io::Write::write_fmt::hb1c61d571fcd8cbf [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x55a2bc840800 - std::sys_common::backtrace::_print::hcd1fe1237ea0c752 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55a2bc840800 - std::sys_common::backtrace::print::hae7d6625a78cd32e [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55a2bc840800 - std::panicking::default_hook::{{closure}}::h9a7fffa4e6b396ed [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x55a2bc8403bb - std::panicking::default_hook::h5dc58e323cddd123 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x55a2bc840eb4 - std::panicking::rust_panic_with_hook::hbef17e4338d7de57 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x55a2bc840962 - std::panicking::begin_panic_handler::{{closure}}::hd8a92a4b1c3baae0 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:519:13 [INFO] [stderr] 12: 0x55a2bc83ee24 - std::sys_common::backtrace::__rust_end_short_backtrace::ha5ac263a7609ace8 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55a2bc8408f9 - rust_begin_unwind [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:517:5 [INFO] [stderr] 14: 0x55a2bc2f28f1 - core::panicking::panic_fmt::hcf5f6d96e1dd7099 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/panicking.rs:93:14 [INFO] [stderr] 15: 0x55a2bc2f283d - core::panicking::panic::hd695e3b1d0dd4ef4 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x55a2bc2f3ed5 - build_script_build::build_own_htslib::h088ebec62cc6c702 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.18/build.rs:33:5 [INFO] [stderr] 17: 0x55a2bc2f430e - build_script_build::main::h33ddefa1aa634faa [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.18/build.rs:65:9 [INFO] [stderr] 18: 0x55a2bc2f54ab - core::ops::function::FnOnce::call_once::h715090ebbddf6ceb [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x55a2bc2f4bee - std::sys_common::backtrace::__rust_begin_short_backtrace::h979fd0ae0e265c66 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x55a2bc2f53f1 - std::rt::lang_start::{{closure}}::hc4a7777997293e19 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/rt.rs:63:18 [INFO] [stderr] 21: 0x55a2bc8414ba - core::ops::function::impls:: for &F>::call_once::hc9bc8961e4809a14 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x55a2bc8414ba - std::panicking::try::do_call::h6f00e12df2af6579 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:403:40 [INFO] [stderr] 23: 0x55a2bc8414ba - std::panicking::try::h588c31a0a9a8ad2c [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:367:19 [INFO] [stderr] 24: 0x55a2bc8414ba - std::panic::catch_unwind::h8ebc4fcb0e51bec0 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panic.rs:129:14 [INFO] [stderr] 25: 0x55a2bc8414ba - std::rt::lang_start_internal::{{closure}}::had93e50fbfd893a1 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/rt.rs:45:48 [INFO] [stderr] 26: 0x55a2bc8414ba - std::panicking::try::do_call::hf70c5056d8b410b7 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:403:40 [INFO] [stderr] 27: 0x55a2bc8414ba - std::panicking::try::h0c680320de5deb84 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panicking.rs:367:19 [INFO] [stderr] 28: 0x55a2bc8414ba - std::panic::catch_unwind::h7b94a99f13366c53 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/panic.rs:129:14 [INFO] [stderr] 29: 0x55a2bc8414ba - std::rt::lang_start_internal::hca14fb2549072049 [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/rt.rs:45:20 [INFO] [stderr] 30: 0x55a2bc2f53c0 - std::rt::lang_start::hd56142918d8bd4be [INFO] [stderr] at /rustc/33fdb797f59421c7bbecaa4588ed5d7a31a9494a/library/std/src/rt.rs:62:5 [INFO] [stderr] 31: 0x55a2bc2f493c - main [INFO] [stderr] 32: 0x7f5f1d80f0b3 - __libc_start_main [INFO] [stderr] 33: 0x55a2bc2f30ee - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "8f76092f3113ecc945102d82fb432d2688906b45145ded0dbf78955396023088", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8f76092f3113ecc945102d82fb432d2688906b45145ded0dbf78955396023088", kill_on_drop: false }` [INFO] [stdout] 8f76092f3113ecc945102d82fb432d2688906b45145ded0dbf78955396023088