[INFO] fetching crate netcdf 0.6.1... [INFO] building netcdf-0.6.1 against master#d5c88c22807925c189328ef9d923c5d2b11a95b8 for pr-87066-3 [INFO] extracting crate netcdf 0.6.1 into /workspace/builds/worker-102/source [INFO] validating manifest of crates.io crate netcdf 0.6.1 on toolchain d5c88c22807925c189328ef9d923c5d2b11a95b8 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d5c88c22807925c189328ef9d923c5d2b11a95b8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf 0.6.1 [INFO] finished tweaking crates.io crate netcdf 0.6.1 [INFO] tweaked toml for crates.io crate netcdf 0.6.1 written to /workspace/builds/worker-102/source/Cargo.toml [INFO] crate crates.io crate netcdf 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d5c88c22807925c189328ef9d923c5d2b11a95b8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded netcdf-sys v0.3.4 [INFO] [stderr] Downloaded ndarray v0.13.1 [INFO] [stderr] Downloaded hdf5-sys v0.7.1 [INFO] [stderr] Downloaded hdf5-src v0.7.1 [INFO] [stderr] Downloaded netcdf-src v0.1.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-102/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-102/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d5c88c22807925c189328ef9d923c5d2b11a95b8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7b09a6697245bd29c0b3591b7fe853c310a811431156b41c76fdac1874831115 [INFO] running `Command { std: "docker" "start" "-a" "7b09a6697245bd29c0b3591b7fe853c310a811431156b41c76fdac1874831115", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7b09a6697245bd29c0b3591b7fe853c310a811431156b41c76fdac1874831115", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7b09a6697245bd29c0b3591b7fe853c310a811431156b41c76fdac1874831115", kill_on_drop: false }` [INFO] [stdout] 7b09a6697245bd29c0b3591b7fe853c310a811431156b41c76fdac1874831115 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-102/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-102/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d5c88c22807925c189328ef9d923c5d2b11a95b8" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b09b9ff66e695125e341091d8333efd36c657baac187cb3032b990a0074c39b9 [INFO] running `Command { std: "docker" "start" "-a" "b09b9ff66e695125e341091d8333efd36c657baac187cb3032b990a0074c39b9", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling once_cell v1.5.2 [INFO] [stderr] Compiling regex-syntax v0.6.22 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling libc v0.2.84 [INFO] [stderr] Compiling cc v1.0.66 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling netcdf-sys v0.3.4 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Compiling matrixmultiply v0.2.4 [INFO] [stderr] Compiling thread_local v1.1.2 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling regex v1.4.3 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-2d1b2b3df17a3a83/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55d45edafa10 - std::backtrace_rs::backtrace::libunwind::trace::h0197874f43e7190f [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55d45edafa10 - std::backtrace_rs::backtrace::trace_unsynchronized::hfdfd566bbbda6f2d [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55d45edafa10 - std::sys_common::backtrace::_print_fmt::hb3b4707c15b032a1 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55d45edafa10 - ::fmt::had1dceac8b072f88 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55d45edcde2c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/core/src/fmt/mod.rs:1117:17 [INFO] [stderr] 5: 0x55d45edace45 - std::io::Write::write_fmt::h05c3bb2bc83b8ed0 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x55d45edb14bb - std::sys_common::backtrace::_print::h10f0826b2a586b58 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55d45edb14bb - std::sys_common::backtrace::print::h0d4242fbd1ac3eb6 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55d45edb14bb - std::panicking::default_hook::{{closure}}::h275ead39fe8b8e2a [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x55d45edb104b - std::panicking::default_hook::h5505d4d90f5984d9 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x55d45edb1b84 - std::panicking::rust_panic_with_hook::h2f8980d1d9fd4ca0 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x55d45ebddfa2 - std::panicking::begin_panic::{{closure}}::h0f03dd5e5e1f577c [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:544:9 [INFO] [stderr] 12: 0x55d45ebddc49 - std::sys_common::backtrace::__rust_end_short_backtrace::h7b7cf36f9d9407fd [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55d45ebddee3 - std::panicking::begin_panic::h277dcc66d4ad41b4 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:543:12 [INFO] [stderr] 14: 0x55d45ebadc67 - build_script_build::LibrarySearcher::try_locate_hdf5_library::hac2ab27b0fba1515 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x55d45ebaf439 - build_script_build::main::h6e934be73ee16d1f [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x55d45ebb46fb - core::ops::function::FnOnce::call_once::had14445c12bbbf9c [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55d45ebbb26e - std::sys_common::backtrace::__rust_begin_short_backtrace::hb9ca2eb03ba372f8 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55d45ebb98d1 - std::rt::lang_start::{{closure}}::hb272f5819fc36c32 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/rt.rs:63:18 [INFO] [stderr] 19: 0x55d45edb208a - core::ops::function::impls:: for &F>::call_once::h5e3bbb97afe2bb03 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55d45edb208a - std::panicking::try::do_call::h48c2d717cec4bdcb [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:403:40 [INFO] [stderr] 21: 0x55d45edb208a - std::panicking::try::h2a49bc215893bc14 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:367:19 [INFO] [stderr] 22: 0x55d45edb208a - std::panic::catch_unwind::h6d23b7c99550c7ff [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panic.rs:129:14 [INFO] [stderr] 23: 0x55d45edb208a - std::rt::lang_start_internal::{{closure}}::h251a0c0729f15896 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/rt.rs:45:48 [INFO] [stderr] 24: 0x55d45edb208a - std::panicking::try::do_call::h4830e784a9b9d1ad [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:403:40 [INFO] [stderr] 25: 0x55d45edb208a - std::panicking::try::h0427859d2ad3b3b9 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:367:19 [INFO] [stderr] 26: 0x55d45edb208a - std::panic::catch_unwind::h4079bfb63395be0f [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panic.rs:129:14 [INFO] [stderr] 27: 0x55d45edb208a - std::rt::lang_start_internal::h408e9d26a25a1f08 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/rt.rs:45:20 [INFO] [stderr] 28: 0x55d45ebb98a0 - std::rt::lang_start::h32ad33e401649d30 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/rt.rs:62:5 [INFO] [stderr] 29: 0x55d45ebb08dc - main [INFO] [stderr] 30: 0x7f9aa148c0b3 - __libc_start_main [INFO] [stderr] 31: 0x55d45eba8f5e - _start [INFO] [stderr] 32: 0x0 - [INFO] running `Command { std: "docker" "inspect" "b09b9ff66e695125e341091d8333efd36c657baac187cb3032b990a0074c39b9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b09b9ff66e695125e341091d8333efd36c657baac187cb3032b990a0074c39b9", kill_on_drop: false }` [INFO] [stdout] b09b9ff66e695125e341091d8333efd36c657baac187cb3032b990a0074c39b9