[INFO] fetching crate gchemol 0.0.41...
[INFO] building gchemol-0.0.41 against master#d5c88c22807925c189328ef9d923c5d2b11a95b8 for pr-87066-3
[INFO] extracting crate gchemol 0.0.41 into /workspace/builds/worker-113/source
[INFO] validating manifest of crates.io crate gchemol 0.0.41 on toolchain d5c88c22807925c189328ef9d923c5d2b11a95b8
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d5c88c22807925c189328ef9d923c5d2b11a95b8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gchemol 0.0.41
[INFO] finished tweaking crates.io crate gchemol 0.0.41
[INFO] tweaked toml for crates.io crate gchemol 0.0.41 written to /workspace/builds/worker-113/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d5c88c22807925c189328ef9d923c5d2b11a95b8" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d5c88c22807925c189328ef9d923c5d2b11a95b8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-113/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-113/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d5c88c22807925c189328ef9d923c5d2b11a95b8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 39363dad114ac0af02b98fb4ed454e57b6cb9cca7992ee36e3422f17224e74a1
[INFO] running `Command { std: "docker" "start" "-a" "39363dad114ac0af02b98fb4ed454e57b6cb9cca7992ee36e3422f17224e74a1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "39363dad114ac0af02b98fb4ed454e57b6cb9cca7992ee36e3422f17224e74a1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "39363dad114ac0af02b98fb4ed454e57b6cb9cca7992ee36e3422f17224e74a1", kill_on_drop: false }`
[INFO] [stdout] 39363dad114ac0af02b98fb4ed454e57b6cb9cca7992ee36e3422f17224e74a1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-113/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-113/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d5c88c22807925c189328ef9d923c5d2b11a95b8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 86c8d107c2768c3981fa7930e3f4ae8673c9eac524c26196cba1c907270698fe
[INFO] running `Command { std: "docker" "start" "-a" "86c8d107c2768c3981fa7930e3f4ae8673c9eac524c26196cba1c907270698fe", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling libc v0.2.99
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.28
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.74
[INFO] [stderr]    Compiling serde_derive v1.0.127
[INFO] [stderr]    Compiling memchr v2.4.0
[INFO] [stderr]    Compiling serde v1.0.127
[INFO] [stderr]    Compiling version_check v0.9.3
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling crossbeam-utils v0.8.5
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling once_cell v1.8.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]    Compiling serde_json v1.0.66
[INFO] [stderr]    Compiling hashbrown v0.11.2
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling typenum v1.13.0
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling itoa v0.4.7
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling anyhow v1.0.43
[INFO] [stderr]    Compiling os_str_bytes v3.1.0
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling ucd-trie v0.1.3
[INFO] [stderr]    Compiling maplit v1.0.2
[INFO] [stderr]    Compiling unic-char-range v0.9.0
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling unic-common v0.9.0
[INFO] [stderr]    Compiling static_assertions v1.1.0
[INFO] [stderr]    Compiling fixedbitset v0.2.0
[INFO] [stderr]    Compiling arrayvec v0.5.2
[INFO] [stderr]    Compiling deunicode v0.4.3
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling quick-error v2.0.1
[INFO] [stderr]    Compiling humansize v1.1.1
[INFO] [stderr]    Compiling percent-encoding v2.1.0
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling textwrap v0.14.2
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling unic-ucd-version v0.9.0
[INFO] [stderr]    Compiling pest v2.1.3
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling memoffset v0.6.4
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling unic-char-property v0.9.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling slug v0.1.4
[INFO] [stderr]    Compiling thread_local v1.1.3
[INFO] [stderr]    Compiling unic-ucd-segment v0.9.0
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling bstr v0.2.16
[INFO] [stderr]    Compiling unic-segment v0.9.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.1
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling pest_meta v2.1.3
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling shared_child v0.3.5
[INFO] [stderr]    Compiling os_pipe v0.9.2
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling duct v0.13.5
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling generic-array v0.13.3
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling env_logger v0.9.0
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.0
[INFO] [stderr]    Compiling globset v0.4.8
[INFO] [stderr]    Compiling rand_distr v0.2.2
[INFO] [stderr]    Compiling ignore v0.4.18
[INFO] [stderr]    Compiling globwalk v0.8.1
[INFO] [stderr]    Compiling pest_generator v2.1.3
[INFO] [stderr]    Compiling chrono-tz v0.5.3
[INFO] [stderr]    Compiling structopt-derive v0.4.15
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.4
[INFO] [stderr]    Compiling pest_derive v2.1.0
[INFO] [stderr]    Compiling structopt v0.3.22
[INFO] [stderr]    Compiling clap v3.0.0-beta.4
[INFO] [stderr]    Compiling toml v0.5.8
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling bimap v0.4.0
[INFO] [stderr]    Compiling envy v0.4.2
[INFO] [stderr]    Compiling alga v0.9.3
[INFO] [stderr]    Compiling nalgebra v0.20.0
[INFO] [stderr]    Compiling handlebars v3.5.5
[INFO] [stderr]    Compiling tera v1.12.1
[INFO] [stderr]    Compiling gchemol-gut v0.1.7
[INFO] [stderr]    Compiling gchemol-parser v0.2.1
[INFO] [stderr]    Compiling gchemol-graph v0.1.1
[INFO] [stderr]    Compiling vecfx v0.1.2
[INFO] [stderr]    Compiling octree v0.1.0
[INFO] [stderr]    Compiling gchemol-lattice v0.1.0
[INFO] [stderr]    Compiling gchemol-geometry v0.0.39
[INFO] [stderr]    Compiling gchemol-neighbors v0.1.0
[INFO] [stderr]    Compiling gchemol-core v0.0.42
[INFO] [stderr]    Compiling gchemol-readwrite v0.0.41
[INFO] [stderr]    Compiling gchemol v0.0.41 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 43.24s
[INFO] running `Command { std: "docker" "inspect" "86c8d107c2768c3981fa7930e3f4ae8673c9eac524c26196cba1c907270698fe", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "86c8d107c2768c3981fa7930e3f4ae8673c9eac524c26196cba1c907270698fe", kill_on_drop: false }`
[INFO] [stdout] 86c8d107c2768c3981fa7930e3f4ae8673c9eac524c26196cba1c907270698fe
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-113/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-113/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d5c88c22807925c189328ef9d923c5d2b11a95b8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] acb0aa7d497488b094a1c3065adf3335a0ae0b9c10ab88b61e9e4f259cdf6560
[INFO] running `Command { std: "docker" "start" "-a" "acb0aa7d497488b094a1c3065adf3335a0ae0b9c10ab88b61e9e4f259cdf6560", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling gchemol v0.0.41 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `gchemol::prelude::*`
[INFO] [stdout]  --> tests/molecule.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use gchemol::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `mol`
[INFO] [stdout]   --> tests/io.rs:44:9
[INFO] [stdout]    |
[INFO] [stdout] 44 |     for mol in gchemol::io::read(&f).expect("read mol2") {
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_mol`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 7.91s
[INFO] running `Command { std: "docker" "inspect" "acb0aa7d497488b094a1c3065adf3335a0ae0b9c10ab88b61e9e4f259cdf6560", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "acb0aa7d497488b094a1c3065adf3335a0ae0b9c10ab88b61e9e4f259cdf6560", kill_on_drop: false }`
[INFO] [stdout] acb0aa7d497488b094a1c3065adf3335a0ae0b9c10ab88b61e9e4f259cdf6560