[INFO] fetching crate d4-hts 0.2.17... [INFO] building d4-hts-0.2.17 against master#d5c88c22807925c189328ef9d923c5d2b11a95b8 for pr-87066-3 [INFO] extracting crate d4-hts 0.2.17 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate d4-hts 0.2.17 on toolchain d5c88c22807925c189328ef9d923c5d2b11a95b8 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d5c88c22807925c189328ef9d923c5d2b11a95b8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4-hts 0.2.17 [INFO] finished tweaking crates.io crate d4-hts 0.2.17 [INFO] tweaked toml for crates.io crate d4-hts 0.2.17 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d5c88c22807925c189328ef9d923c5d2b11a95b8" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d5c88c22807925c189328ef9d923c5d2b11a95b8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d5c88c22807925c189328ef9d923c5d2b11a95b8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] d836c4bcb89c9389d742768364794bf56adbefcc3e690e79a2db44e2fe2064a8 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d836c4bcb89c9389d742768364794bf56adbefcc3e690e79a2db44e2fe2064a8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d836c4bcb89c9389d742768364794bf56adbefcc3e690e79a2db44e2fe2064a8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d836c4bcb89c9389d742768364794bf56adbefcc3e690e79a2db44e2fe2064a8", kill_on_drop: false }` [INFO] [stdout] d836c4bcb89c9389d742768364794bf56adbefcc3e690e79a2db44e2fe2064a8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d5c88c22807925c189328ef9d923c5d2b11a95b8" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 2d29ae2ddb053fc037d1138c1b9965f6ce9911133a090d2b9c4685072cfc951e [INFO] running `Command { std: "docker" "start" "-a" "2d29ae2ddb053fc037d1138c1b9965f6ce9911133a090d2b9c4685072cfc951e", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.99 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling proc-macro2 v1.0.28 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling d4-hts v0.2.17 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.2.17 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-83ce39dcbefd61df/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-69cb4293d25a577c/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-69cb4293d25a577c/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', build.rs:33:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x558e21d16770 - std::backtrace_rs::backtrace::libunwind::trace::h0197874f43e7190f [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x558e21d16770 - std::backtrace_rs::backtrace::trace_unsynchronized::hfdfd566bbbda6f2d [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x558e21d16770 - std::sys_common::backtrace::_print_fmt::hb3b4707c15b032a1 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x558e21d16770 - ::fmt::had1dceac8b072f88 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x558e21d3aebc - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/core/src/fmt/mod.rs:1117:17 [INFO] [stderr] 5: 0x558e21d13545 - std::io::Write::write_fmt::h05c3bb2bc83b8ed0 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/io/mod.rs:1667:15 [INFO] [stderr] 6: 0x558e21d1840b - std::sys_common::backtrace::_print::h10f0826b2a586b58 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x558e21d1840b - std::sys_common::backtrace::print::h0d4242fbd1ac3eb6 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x558e21d1840b - std::panicking::default_hook::{{closure}}::h275ead39fe8b8e2a [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:210:50 [INFO] [stderr] 9: 0x558e21d17f9b - std::panicking::default_hook::h5505d4d90f5984d9 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x558e21d18ad4 - std::panicking::rust_panic_with_hook::h2f8980d1d9fd4ca0 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:624:17 [INFO] [stderr] 11: 0x558e21d18582 - std::panicking::begin_panic_handler::{{closure}}::hd87853ef7e40ae97 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:519:13 [INFO] [stderr] 12: 0x558e21d16c74 - std::sys_common::backtrace::__rust_end_short_backtrace::hcab167aa940694a2 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x558e21d18519 - rust_begin_unwind [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:517:5 [INFO] [stderr] 14: 0x558e217ed8b1 - core::panicking::panic_fmt::hcf5f6d96e1dd7099 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/core/src/panicking.rs:93:14 [INFO] [stderr] 15: 0x558e217ed7fd - core::panicking::panic::hd695e3b1d0dd4ef4 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x558e217ee995 - build_script_build::build_own_htslib::hb028caa890736919 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:33:5 [INFO] [stderr] 17: 0x558e217eedce - build_script_build::main::h79922cbc419b72e9 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:65:9 [INFO] [stderr] 18: 0x558e217f04cb - core::ops::function::FnOnce::call_once::h44f593adf8dc8e7d [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x558e217efbae - std::sys_common::backtrace::__rust_begin_short_backtrace::h5e3fe72f212c0b2d [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x558e217f03d1 - std::rt::lang_start::{{closure}}::h05874b8bda71c4c3 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/rt.rs:63:18 [INFO] [stderr] 21: 0x558e21d18fda - core::ops::function::impls:: for &F>::call_once::h5e3bbb97afe2bb03 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x558e21d18fda - std::panicking::try::do_call::h48c2d717cec4bdcb [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:403:40 [INFO] [stderr] 23: 0x558e21d18fda - std::panicking::try::h2a49bc215893bc14 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:367:19 [INFO] [stderr] 24: 0x558e21d18fda - std::panic::catch_unwind::h6d23b7c99550c7ff [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panic.rs:129:14 [INFO] [stderr] 25: 0x558e21d18fda - std::rt::lang_start_internal::{{closure}}::h251a0c0729f15896 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/rt.rs:45:48 [INFO] [stderr] 26: 0x558e21d18fda - std::panicking::try::do_call::h4830e784a9b9d1ad [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:403:40 [INFO] [stderr] 27: 0x558e21d18fda - std::panicking::try::h0427859d2ad3b3b9 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panicking.rs:367:19 [INFO] [stderr] 28: 0x558e21d18fda - std::panic::catch_unwind::h4079bfb63395be0f [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/panic.rs:129:14 [INFO] [stderr] 29: 0x558e21d18fda - std::rt::lang_start_internal::h408e9d26a25a1f08 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/rt.rs:45:20 [INFO] [stderr] 30: 0x558e217f03a0 - std::rt::lang_start::h243a9e9a41115447 [INFO] [stderr] at /rustc/d5c88c22807925c189328ef9d923c5d2b11a95b8/library/std/src/rt.rs:62:5 [INFO] [stderr] 31: 0x558e217ef3fc - main [INFO] [stderr] 32: 0x7f3f002ed0b3 - __libc_start_main [INFO] [stderr] 33: 0x558e217ee0ae - _start [INFO] [stderr] 34: 0x0 - [INFO] running `Command { std: "docker" "inspect" "2d29ae2ddb053fc037d1138c1b9965f6ce9911133a090d2b9c4685072cfc951e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2d29ae2ddb053fc037d1138c1b9965f6ce9911133a090d2b9c4685072cfc951e", kill_on_drop: false }` [INFO] [stdout] 2d29ae2ddb053fc037d1138c1b9965f6ce9911133a090d2b9c4685072cfc951e