[INFO] fetching crate librna-sys 0.1.2... [INFO] checking librna-sys-0.1.2 against try#ddfd70ee3c3748e597b32f416b0d15a4f6e37685 for pr-87050 [INFO] extracting crate librna-sys 0.1.2 into /workspace/builds/worker-8/source [INFO] validating manifest of crates.io crate librna-sys 0.1.2 on toolchain ddfd70ee3c3748e597b32f416b0d15a4f6e37685 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ddfd70ee3c3748e597b32f416b0d15a4f6e37685" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate librna-sys 0.1.2 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate librna-sys 0.1.2 [INFO] tweaked toml for crates.io crate librna-sys 0.1.2 written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate crates.io crate librna-sys 0.1.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ddfd70ee3c3748e597b32f416b0d15a4f6e37685" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded ghost v0.1.2 [INFO] [stderr] Downloaded pyo3-macros-backend v0.13.2 [INFO] [stderr] Downloaded pyo3-macros v0.13.2 [INFO] [stderr] Downloaded indoc v0.3.6 [INFO] [stderr] Downloaded indoc-impl v0.3.6 [INFO] [stderr] Downloaded libloading v0.6.3 [INFO] [stderr] Downloaded inventory-impl v0.1.10 [INFO] [stderr] Downloaded ctor v0.1.16 [INFO] [stderr] Downloaded syn v1.0.41 [INFO] [stderr] Downloaded pyo3 v0.13.2 [INFO] [stderr] Downloaded inventory v0.1.10 [INFO] [stderr] Downloaded clang-sys v1.0.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+ddfd70ee3c3748e597b32f416b0d15a4f6e37685" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 03822e713e3f1b6af30da56b58c884e8dfdb23fe81719ca3f4b18976f700fd31 [INFO] running `Command { std: "docker" "start" "-a" "03822e713e3f1b6af30da56b58c884e8dfdb23fe81719ca3f4b18976f700fd31", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "03822e713e3f1b6af30da56b58c884e8dfdb23fe81719ca3f4b18976f700fd31", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "03822e713e3f1b6af30da56b58c884e8dfdb23fe81719ca3f4b18976f700fd31", kill_on_drop: false }` [INFO] [stdout] 03822e713e3f1b6af30da56b58c884e8dfdb23fe81719ca3f4b18976f700fd31 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+ddfd70ee3c3748e597b32f416b0d15a4f6e37685" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] df768b99cde3205749c4b602ca26ca72a2c120ba941dbe5dc466c4b338c2143c [INFO] running `Command { std: "docker" "start" "-a" "df768b99cde3205749c4b602ca26ca72a2c120ba941dbe5dc466c4b338c2143c", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.19 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling libc v0.2.76 [INFO] [stderr] Compiling syn v1.0.41 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling bindgen v0.58.1 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling shlex v1.0.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling pyo3 v0.13.2 [INFO] [stderr] Checking instant v0.1.9 [INFO] [stderr] Checking lock_api v0.4.4 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling clang-sys v1.0.0 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Checking parking_lot_core v0.8.3 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.8.3 [INFO] [stderr] Compiling pyo3-macros-backend v0.13.2 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling ctor v0.1.16 [INFO] [stderr] Compiling inventory-impl v0.1.10 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling pyo3-macros v0.13.2 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Checking inventory v0.1.10 [INFO] [stderr] Compiling librna-sys v0.1.2 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: LIBRNA_INCLUDE_DIR not set. [INFO] [stderr] warning: Using LIBRNA_INCLUDE_DIR=/usr/include as default. [INFO] [stderr] warning: LIBRNA_LIB_DIR not set. [INFO] [stderr] warning: Using LIBRNA_LIB_DIR=/usr/lib as default. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `librna-sys v0.1.2 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/librna-sys-9276dfbdbb977835/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=LIBRNA_INCLUDE_DIR not set. [INFO] [stderr] cargo:warning=Using LIBRNA_INCLUDE_DIR=/usr/include as default. [INFO] [stderr] cargo:include=/usr/include [INFO] [stderr] cargo:warning=LIBRNA_LIB_DIR not set. [INFO] [stderr] cargo:warning=Using LIBRNA_LIB_DIR=/usr/lib as default. [INFO] [stderr] cargo:rustc-link-search=native=/usr/lib [INFO] [stderr] cargo:rustc-link-lib=static=RNA [INFO] [stderr] cargo:rerun-if-changed=src/wrapper.h [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] src/wrapper.h:1:10: fatal error: 'ViennaRNA/2Dfold.h' file not found [INFO] [stderr] src/wrapper.h:1:10: fatal error: 'ViennaRNA/2Dfold.h' file not found, err: true [INFO] [stderr] thread 'main' panicked at 'Unable to generate bindings: ()', src/build.rs:72:10 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55a93c6a3700 - std::backtrace_rs::backtrace::libunwind::trace::h706b838f5bbd876b [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55a93c6a3700 - std::backtrace_rs::backtrace::trace_unsynchronized::hc15f29ae7822b7b8 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55a93c6a3700 - std::sys_common::backtrace::_print_fmt::h7c580c971f91926c [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55a93c6a3700 - ::fmt::h2a772198c4032452 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55a93c6c823c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/core/src/fmt/mod.rs:1115:17 [INFO] [stderr] 5: 0x55a93c6a0675 - std::io::Write::write_fmt::h00f38d9eb2c32e02 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/io/mod.rs:1663:15 [INFO] [stderr] 6: 0x55a93c6a5a7b - std::sys_common::backtrace::_print::h5b3c171e6f864ae4 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55a93c6a5a7b - std::sys_common::backtrace::print::h93b9e9ed2a98e611 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55a93c6a5a7b - std::panicking::default_hook::{{closure}}::hd8da92bb68d520c5 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55a93c6a5551 - std::panicking::default_hook::hdbc8b2951c5afbab [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55a93c6a6144 - std::panicking::rust_panic_with_hook::h8a4c841655926f4e [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x55a93c6a5c27 - std::panicking::begin_panic_handler::{{closure}}::h471b6bc74904b7b0 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/panicking.rs:519:13 [INFO] [stderr] 12: 0x55a93c6a3bfc - std::sys_common::backtrace::__rust_end_short_backtrace::h309f5c707f29932f [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55a93c6a5b89 - rust_begin_unwind [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/panicking.rs:515:5 [INFO] [stderr] 14: 0x55a93c16e951 - core::panicking::panic_fmt::hcf5f6d96e1dd7099 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x55a93c16ea43 - core::result::unwrap_failed::he898b02f57993c42 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/core/src/result.rs:1355:5 [INFO] [stderr] 16: 0x55a93c174cf6 - core::result::Result::expect::hdef95f45aceafe25 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/core/src/result.rs:997:23 [INFO] [stderr] 17: 0x55a93c172d72 - build_script_build::main::ha17e360faed6c40f [INFO] [stderr] at /opt/rustwide/workdir/src/build.rs:67:20 [INFO] [stderr] 18: 0x55a93c174a4b - core::ops::function::FnOnce::call_once::hf3c580c90d0a9d11 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x55a93c17494e - std::sys_common::backtrace::__rust_begin_short_backtrace::h14e475429e19caa2 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x55a93c174671 - std::rt::lang_start::{{closure}}::h7d943f26ea0e2062 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/rt.rs:63:18 [INFO] [stderr] 21: 0x55a93c6a674a - core::ops::function::impls:: for &F>::call_once::hcbe5785d54a49ce2 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x55a93c6a674a - std::panicking::try::do_call::h1c15e7ee8563c29d [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/panicking.rs:401:40 [INFO] [stderr] 23: 0x55a93c6a674a - std::panicking::try::hb8b07cef009cb4fc [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/panicking.rs:365:19 [INFO] [stderr] 24: 0x55a93c6a674a - std::panic::catch_unwind::h65a8efbe596bcbb1 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/panic.rs:434:14 [INFO] [stderr] 25: 0x55a93c6a674a - std::rt::lang_start_internal::{{closure}}::h66ded7ab0f18e9fb [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/rt.rs:45:48 [INFO] [stderr] 26: 0x55a93c6a674a - std::panicking::try::do_call::h29cafa65efb3f3f3 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/panicking.rs:401:40 [INFO] [stderr] 27: 0x55a93c6a674a - std::panicking::try::h412fc5378b4dbfc4 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/panicking.rs:365:19 [INFO] [stderr] 28: 0x55a93c6a674a - std::panic::catch_unwind::h555def6aac5bf192 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/panic.rs:434:14 [INFO] [stderr] 29: 0x55a93c6a674a - std::rt::lang_start_internal::hfff48202d7fee6e3 [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/rt.rs:45:20 [INFO] [stderr] 30: 0x55a93c174640 - std::rt::lang_start::hb6a99a45fa6621da [INFO] [stderr] at /rustc/ddfd70ee3c3748e597b32f416b0d15a4f6e37685/library/std/src/rt.rs:62:5 [INFO] [stderr] 31: 0x55a93c172fdc - main [INFO] [stderr] 32: 0x7f1f622d50b3 - __libc_start_main [INFO] [stderr] 33: 0x55a93c16f14e - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "df768b99cde3205749c4b602ca26ca72a2c120ba941dbe5dc466c4b338c2143c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "df768b99cde3205749c4b602ca26ca72a2c120ba941dbe5dc466c4b338c2143c", kill_on_drop: false }` [INFO] [stdout] df768b99cde3205749c4b602ca26ca72a2c120ba941dbe5dc466c4b338c2143c