[INFO] fetching crate gchemol 0.0.41...
[INFO] checking gchemol-0.0.41 against master#dfd7b8d03fb93d0e03147d28b3be6d93260fa94d for pr-87050
[INFO] extracting crate gchemol 0.0.41 into /workspace/builds/worker-7/source
[INFO] validating manifest of crates.io crate gchemol 0.0.41 on toolchain dfd7b8d03fb93d0e03147d28b3be6d93260fa94d
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gchemol 0.0.41
[INFO] finished tweaking crates.io crate gchemol 0.0.41
[INFO] tweaked toml for crates.io crate gchemol 0.0.41 written to /workspace/builds/worker-7/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f4d74d142553b69513eef4d677d5c7012b9a3381ccf76b209f45d248e6106d80
[INFO] running `Command { std: "docker" "start" "-a" "f4d74d142553b69513eef4d677d5c7012b9a3381ccf76b209f45d248e6106d80", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f4d74d142553b69513eef4d677d5c7012b9a3381ccf76b209f45d248e6106d80", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f4d74d142553b69513eef4d677d5c7012b9a3381ccf76b209f45d248e6106d80", kill_on_drop: false }`
[INFO] [stdout] f4d74d142553b69513eef4d677d5c7012b9a3381ccf76b209f45d248e6106d80
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7ee6eb8d223538b1ccad81b54c6c2bba5015abb3027d0d3213f8417c324ef0c6
[INFO] running `Command { std: "docker" "start" "-a" "7ee6eb8d223538b1ccad81b54c6c2bba5015abb3027d0d3213f8417c324ef0c6", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling libc v0.2.98
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.27
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.73
[INFO] [stderr]    Compiling memchr v2.4.0
[INFO] [stderr]    Compiling serde_derive v1.0.126
[INFO] [stderr]    Compiling serde v1.0.126
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling version_check v0.9.3
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.5
[INFO] [stderr]     Checking ppv-lite86 v0.2.10
[INFO] [stderr]     Checking regex-syntax v0.6.25
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]     Checking once_cell v1.8.0
[INFO] [stderr]     Checking scopeguard v1.1.0
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling serde_json v1.0.64
[INFO] [stderr]    Compiling typenum v1.13.0
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking termcolor v1.1.2
[INFO] [stderr]    Compiling unicode-segmentation v1.8.0
[INFO] [stderr]     Checking unicode-width v0.1.8
[INFO] [stderr]     Checking itoa v0.4.7
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]    Compiling anyhow v1.0.42
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking humantime v2.1.0
[INFO] [stderr]    Compiling ucd-trie v0.1.3
[INFO] [stderr]    Compiling maplit v1.0.2
[INFO] [stderr]     Checking hashbrown v0.11.2
[INFO] [stderr]     Checking same-file v1.0.6
[INFO] [stderr]     Checking fnv v1.0.7
[INFO] [stderr]     Checking unic-common v0.9.0
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]     Checking unic-char-range v0.9.0
[INFO] [stderr]     Checking arrayvec v0.5.2
[INFO] [stderr]     Checking fixedbitset v0.2.0
[INFO] [stderr]     Checking static_assertions v1.1.0
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]     Checking deunicode v0.4.3
[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]     Checking remove_dir_all v0.5.3
[INFO] [stderr]     Checking humansize v1.1.1
[INFO] [stderr]     Checking quick-error v2.0.1
[INFO] [stderr]     Checking matrixmultiply v0.2.4
[INFO] [stderr]     Checking humantime v1.3.0
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking thread_local v1.1.3
[INFO] [stderr]    Compiling pest v2.1.3
[INFO] [stderr]     Checking walkdir v2.3.2
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]     Checking unic-ucd-version v0.9.0
[INFO] [stderr]     Checking unic-char-property v0.9.0
[INFO] [stderr]     Checking slug v0.1.4
[INFO] [stderr]     Checking unic-ucd-segment v0.9.0
[INFO] [stderr]     Checking unic-segment v0.9.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling memoffset v0.6.4
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.1
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling pest_meta v2.1.3
[INFO] [stderr]     Checking aho-corasick v0.7.18
[INFO] [stderr]     Checking bstr v0.2.16
[INFO] [stderr]     Checking crossbeam-deque v0.8.0
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking os_pipe v0.9.2
[INFO] [stderr]     Checking shared_child v0.3.5
[INFO] [stderr]     Checking getrandom v0.2.3
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking duct v0.13.5
[INFO] [stderr]     Checking regex v1.5.4
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]     Checking generic-array v0.13.3
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.4
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.0
[INFO] [stderr]     Checking chrono v0.4.19
[INFO] [stderr]     Checking rand_distr v0.2.2
[INFO] [stderr]     Checking env_logger v0.7.1
[INFO] [stderr]     Checking env_logger v0.8.4
[INFO] [stderr]     Checking globset v0.4.8
[INFO] [stderr]     Checking pretty_env_logger v0.4.0
[INFO] [stderr]     Checking ignore v0.4.18
[INFO] [stderr]     Checking tempfile v3.2.0
[INFO] [stderr]    Compiling pest_generator v2.1.3
[INFO] [stderr]     Checking globwalk v0.8.1
[INFO] [stderr]    Compiling chrono-tz v0.5.3
[INFO] [stderr]    Compiling structopt-derive v0.4.15
[INFO] [stderr]    Compiling pest_derive v2.1.0
[INFO] [stderr]     Checking structopt v0.3.22
[INFO] [stderr]     Checking toml v0.5.8
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking envy v0.4.2
[INFO] [stderr]     Checking bimap v0.4.0
[INFO] [stderr]     Checking alga v0.9.3
[INFO] [stderr]     Checking handlebars v3.5.5
[INFO] [stderr]     Checking tera v1.12.1
[INFO] [stderr]     Checking nalgebra v0.20.0
[INFO] [stderr]     Checking gchemol-gut v0.1.5
[INFO] [stderr]     Checking gchemol-parser v0.2.1
[INFO] [stderr]     Checking gchemol-graph v0.1.1
[INFO] [stderr]     Checking vecfx v0.1.2
[INFO] [stderr]     Checking gchemol-lattice v0.1.0
[INFO] [stderr]     Checking octree v0.1.0
[INFO] [stderr]     Checking gchemol-geometry v0.0.39
[INFO] [stderr]     Checking gchemol-neighbors v0.1.0
[INFO] [stderr]     Checking gchemol-core v0.0.42
[INFO] [stderr]     Checking gchemol-readwrite v0.0.41
[INFO] [stderr]     Checking gchemol v0.0.41 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `gchemol::prelude::*`
[INFO] [stdout]  --> tests/molecule.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use gchemol::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `mol`
[INFO] [stdout]   --> tests/io.rs:44:9
[INFO] [stdout]    |
[INFO] [stdout] 44 |     for mol in gchemol::io::read(&f).expect("read mol2") {
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_mol`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 53.80s
[INFO] running `Command { std: "docker" "inspect" "7ee6eb8d223538b1ccad81b54c6c2bba5015abb3027d0d3213f8417c324ef0c6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7ee6eb8d223538b1ccad81b54c6c2bba5015abb3027d0d3213f8417c324ef0c6", kill_on_drop: false }`
[INFO] [stdout] 7ee6eb8d223538b1ccad81b54c6c2bba5015abb3027d0d3213f8417c324ef0c6