[INFO] fetching crate d4utils 0.2.17... [INFO] checking d4utils-0.2.17 against master#dfd7b8d03fb93d0e03147d28b3be6d93260fa94d for pr-87050 [INFO] extracting crate d4utils 0.2.17 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate d4utils 0.2.17 on toolchain dfd7b8d03fb93d0e03147d28b3be6d93260fa94d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4utils 0.2.17 [INFO] finished tweaking crates.io crate d4utils 0.2.17 [INFO] tweaked toml for crates.io crate d4utils 0.2.17 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate crates.io crate d4utils 0.2.17 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 608613f62a5b4a832689c656d54d992c62809045ab4566cdddea22767021faa6 [INFO] running `Command { std: "docker" "start" "-a" "608613f62a5b4a832689c656d54d992c62809045ab4566cdddea22767021faa6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "608613f62a5b4a832689c656d54d992c62809045ab4566cdddea22767021faa6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "608613f62a5b4a832689c656d54d992c62809045ab4566cdddea22767021faa6", kill_on_drop: false }` [INFO] [stdout] 608613f62a5b4a832689c656d54d992c62809045ab4566cdddea22767021faa6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cc73a497cd879ecb305b1d47d78821422ea80f9eae4fdd6d406212bfb3d2c02d [INFO] running `Command { std: "docker" "start" "-a" "cc73a497cd879ecb305b1d47d78821422ea80f9eae4fdd6d406212bfb3d2c02d", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling serde v1.0.125 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Checking adler v1.0.2 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Compiling serde_derive v1.0.125 [INFO] [stderr] Compiling serde_json v1.0.64 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Checking itoa v0.4.7 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.4 [INFO] [stderr] Compiling memoffset v0.6.3 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling libc v0.2.94 [INFO] [stderr] Compiling proc-macro2 v1.0.26 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Checking getrandom v0.1.16 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Compiling syn v1.0.72 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking aho-corasick v0.7.18 [INFO] [stderr] Checking crossbeam-epoch v0.9.4 [INFO] [stderr] Checking crossbeam-channel v0.5.1 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Checking flate2 v1.0.20 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking plotters v0.2.15 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Checking d4-framefile v0.2.17 [INFO] [stderr] Compiling d4-hts v0.2.17 [INFO] [stderr] Compiling d4-bigwig v0.2.17 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.2.17` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-2c5628120f11e38a/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-b483787bffca4bcd/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-b483787bffca4bcd/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.2.17/build.rs:33:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55c1b1979130 - std::backtrace_rs::backtrace::libunwind::trace::h706b838f5bbd876b [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55c1b1979130 - std::backtrace_rs::backtrace::trace_unsynchronized::hc15f29ae7822b7b8 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55c1b1979130 - std::sys_common::backtrace::_print_fmt::h7c580c971f91926c [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55c1b1979130 - ::fmt::h2a772198c4032452 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55c1b199df9c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/core/src/fmt/mod.rs:1115:17 [INFO] [stderr] 5: 0x55c1b1975ec5 - std::io::Write::write_fmt::h00f38d9eb2c32e02 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/io/mod.rs:1663:15 [INFO] [stderr] 6: 0x55c1b197b5eb - std::sys_common::backtrace::_print::h5b3c171e6f864ae4 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55c1b197b5eb - std::sys_common::backtrace::print::h93b9e9ed2a98e611 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55c1b197b5eb - std::panicking::default_hook::{{closure}}::hd8da92bb68d520c5 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55c1b197b0c1 - std::panicking::default_hook::hdbc8b2951c5afbab [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55c1b197bcb4 - std::panicking::rust_panic_with_hook::h8a4c841655926f4e [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x55c1b197b767 - std::panicking::begin_panic_handler::{{closure}}::h471b6bc74904b7b0 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:517:13 [INFO] [stderr] 12: 0x55c1b197962c - std::sys_common::backtrace::__rust_end_short_backtrace::h309f5c707f29932f [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55c1b197b6f9 - rust_begin_unwind [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:515:5 [INFO] [stderr] 14: 0x55c1b1428951 - core::panicking::panic_fmt::hcf5f6d96e1dd7099 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x55c1b142889d - core::panicking::panic::hd695e3b1d0dd4ef4 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x55c1b1429a5d - build_script_build::build_own_htslib::h6c0f69dc7d62f0e7 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.2.17/build.rs:33:5 [INFO] [stderr] 17: 0x55c1b1429ebe - build_script_build::main::h7d5f70c289f2747e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.2.17/build.rs:65:9 [INFO] [stderr] 18: 0x55c1b142b59b - core::ops::function::FnOnce::call_once::h19c634915c226a95 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x55c1b142acde - std::sys_common::backtrace::__rust_begin_short_backtrace::h883a31134aa2e26b [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x55c1b142b4f1 - std::rt::lang_start::{{closure}}::h0ae787c6d035429b [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/rt.rs:63:18 [INFO] [stderr] 21: 0x55c1b197c2ba - core::ops::function::impls:: for &F>::call_once::hcbe5785d54a49ce2 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x55c1b197c2ba - std::panicking::try::do_call::h1c15e7ee8563c29d [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:401:40 [INFO] [stderr] 23: 0x55c1b197c2ba - std::panicking::try::hb8b07cef009cb4fc [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:365:19 [INFO] [stderr] 24: 0x55c1b197c2ba - std::panic::catch_unwind::h65a8efbe596bcbb1 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panic.rs:434:14 [INFO] [stderr] 25: 0x55c1b197c2ba - std::rt::lang_start_internal::{{closure}}::h66ded7ab0f18e9fb [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/rt.rs:45:48 [INFO] [stderr] 26: 0x55c1b197c2ba - std::panicking::try::do_call::h29cafa65efb3f3f3 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:401:40 [INFO] [stderr] 27: 0x55c1b197c2ba - std::panicking::try::h412fc5378b4dbfc4 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:365:19 [INFO] [stderr] 28: 0x55c1b197c2ba - std::panic::catch_unwind::h555def6aac5bf192 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panic.rs:434:14 [INFO] [stderr] 29: 0x55c1b197c2ba - std::rt::lang_start_internal::hfff48202d7fee6e3 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/rt.rs:45:20 [INFO] [stderr] 30: 0x55c1b142b4c0 - std::rt::lang_start::h5002dce5f175ba4d [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/rt.rs:62:5 [INFO] [stderr] 31: 0x55c1b142a50c - main [INFO] [stderr] 32: 0x7f8e1b3720b3 - __libc_start_main [INFO] [stderr] 33: 0x55c1b142914e - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "cc73a497cd879ecb305b1d47d78821422ea80f9eae4fdd6d406212bfb3d2c02d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cc73a497cd879ecb305b1d47d78821422ea80f9eae4fdd6d406212bfb3d2c02d", kill_on_drop: false }` [INFO] [stdout] cc73a497cd879ecb305b1d47d78821422ea80f9eae4fdd6d406212bfb3d2c02d