[INFO] cloning repository https://github.com/preiter93/rustpde [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/preiter93/rustpde" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpreiter93%2Frustpde", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpreiter93%2Frustpde'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] f064a5b7b79a257ff9beaa0e53ced86c8da7444e [INFO] checking preiter93/rustpde against master#dfd7b8d03fb93d0e03147d28b3be6d93260fa94d for pr-87050 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpreiter93%2Frustpde" "/workspace/builds/worker-7/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/preiter93/rustpde on toolchain dfd7b8d03fb93d0e03147d28b3be6d93260fa94d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/preiter93/rustpde [INFO] finished tweaking git repo https://github.com/preiter93/rustpde [INFO] tweaked toml for git repo https://github.com/preiter93/rustpde written to /workspace/builds/worker-7/source/Cargo.toml [INFO] crate git repo https://github.com/preiter93/rustpde already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8a88b47eec1e559ad0732ac3c547efbe7050e830b5b220c6c15b5fc0f7cce964 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8a88b47eec1e559ad0732ac3c547efbe7050e830b5b220c6c15b5fc0f7cce964", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8a88b47eec1e559ad0732ac3c547efbe7050e830b5b220c6c15b5fc0f7cce964", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8a88b47eec1e559ad0732ac3c547efbe7050e830b5b220c6c15b5fc0f7cce964", kill_on_drop: false }` [INFO] [stdout] 8a88b47eec1e559ad0732ac3c547efbe7050e830b5b220c6c15b5fc0f7cce964 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 469b5deff851973d2e50f7c590701eb7c398ebe259ec04330be873a3f706bb3c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "469b5deff851973d2e50f7c590701eb7c398ebe259ec04330be873a3f706bb3c", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.97 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling semver v1.0.3 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking strength_reduce v0.2.3 [INFO] [stderr] Compiling ndarray v0.14.0 [INFO] [stderr] Checking blas-src v0.6.1 [INFO] [stderr] Compiling hdf5 v0.7.1 [INFO] [stderr] Compiling once_cell v1.8.0 [INFO] [stderr] Compiling serde_derive v1.0.126 [INFO] [stderr] Checking plotters-backend v0.3.2 [INFO] [stderr] Checking regex-automata v0.1.10 [INFO] [stderr] Checking same-file v1.0.6 [INFO] [stderr] Checking half v1.7.1 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Checking instant v0.1.9 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Checking itertools v0.10.1 [INFO] [stderr] Checking matrixmultiply v0.3.1 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Checking walkdir v2.3.2 [INFO] [stderr] Checking plotters-svg v0.3.1 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking bstr v0.2.16 [INFO] [stderr] Checking serde_cbor v0.11.1 [INFO] [stderr] Checking serde_json v1.0.64 [INFO] [stderr] Compiling syn v1.0.73 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking crossbeam-epoch v0.9.5 [INFO] [stderr] Checking crossbeam-channel v0.5.1 [INFO] [stderr] Compiling rustc_version v0.4.0 [INFO] [stderr] Checking csv v1.1.6 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Compiling dirs-sys v0.3.6 [INFO] [stderr] Compiling cast v0.2.7 [INFO] [stderr] Checking getrandom v0.1.16 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking lapack-sys v0.12.1 [INFO] [stderr] Checking cblas-sys v0.1.4 [INFO] [stderr] Checking parking_lot_core v0.8.3 [INFO] [stderr] Checking hdf5-types v0.7.1 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking tinytemplate v1.2.1 [INFO] [stderr] Compiling dirs v3.0.2 [INFO] [stderr] Checking num-complex v0.4.0 [INFO] [stderr] Checking approx v0.4.0 [INFO] [stderr] Checking plotters v0.3.1 [INFO] [stderr] Checking rayon-core v1.9.1 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking primal-check v0.3.1 [INFO] [stderr] Checking transpose v0.2.1 [INFO] [stderr] Checking criterion-plot v0.4.3 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-5d103b5c69600da3/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55d824593130 - std::backtrace_rs::backtrace::libunwind::trace::h706b838f5bbd876b [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55d824593130 - std::backtrace_rs::backtrace::trace_unsynchronized::hc15f29ae7822b7b8 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55d824593130 - std::sys_common::backtrace::_print_fmt::h7c580c971f91926c [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55d824593130 - ::fmt::h2a772198c4032452 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55d8245b168c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/core/src/fmt/mod.rs:1115:17 [INFO] [stderr] 5: 0x55d824590545 - std::io::Write::write_fmt::h00f38d9eb2c32e02 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/io/mod.rs:1663:15 [INFO] [stderr] 6: 0x55d82459519b - std::sys_common::backtrace::_print::h5b3c171e6f864ae4 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55d82459519b - std::sys_common::backtrace::print::h93b9e9ed2a98e611 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55d82459519b - std::panicking::default_hook::{{closure}}::hd8da92bb68d520c5 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55d824594c71 - std::panicking::default_hook::hdbc8b2951c5afbab [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55d824595864 - std::panicking::rust_panic_with_hook::h8a4c841655926f4e [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x55d8243bd5c3 - std::panicking::begin_panic::{{closure}}::h704773e85287551d [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:542:9 [INFO] [stderr] 12: 0x55d8243b8709 - std::sys_common::backtrace::__rust_end_short_backtrace::h1bb2a0effa8ed52b [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55d8243bd4f9 - std::panicking::begin_panic::hc18ed230657216d0 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:541:12 [INFO] [stderr] 14: 0x55d82438ded7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::ha71e43a7aff2219e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x55d82438f6fb - build_script_build::main::h262d9f8c7f3f5dfb [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x55d82439354b - core::ops::function::FnOnce::call_once::h90d0e9c082a19a57 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55d824399a6e - std::sys_common::backtrace::__rust_begin_short_backtrace::h8f38d4507e045c95 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55d824397fc1 - std::rt::lang_start::{{closure}}::h668f1a2fe248cef8 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/rt.rs:63:18 [INFO] [stderr] 19: 0x55d824595d6a - core::ops::function::impls:: for &F>::call_once::hcbe5785d54a49ce2 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55d824595d6a - std::panicking::try::do_call::h1c15e7ee8563c29d [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:401:40 [INFO] [stderr] 21: 0x55d824595d6a - std::panicking::try::hb8b07cef009cb4fc [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:365:19 [INFO] [stderr] 22: 0x55d824595d6a - std::panic::catch_unwind::h65a8efbe596bcbb1 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panic.rs:434:14 [INFO] [stderr] 23: 0x55d824595d6a - std::rt::lang_start_internal::{{closure}}::h66ded7ab0f18e9fb [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/rt.rs:45:48 [INFO] [stderr] 24: 0x55d824595d6a - std::panicking::try::do_call::h29cafa65efb3f3f3 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:401:40 [INFO] [stderr] 25: 0x55d824595d6a - std::panicking::try::h412fc5378b4dbfc4 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:365:19 [INFO] [stderr] 26: 0x55d824595d6a - std::panic::catch_unwind::h555def6aac5bf192 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panic.rs:434:14 [INFO] [stderr] 27: 0x55d824595d6a - std::rt::lang_start_internal::hfff48202d7fee6e3 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/rt.rs:45:20 [INFO] [stderr] 28: 0x55d824397f90 - std::rt::lang_start::h60d49805b26b4106 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/rt.rs:62:5 [INFO] [stderr] 29: 0x55d824390bec - main [INFO] [stderr] 30: 0x7f3cc805c0b3 - __libc_start_main [INFO] [stderr] 31: 0x55d824388f2e - _start [INFO] [stderr] 32: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "469b5deff851973d2e50f7c590701eb7c398ebe259ec04330be873a3f706bb3c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "469b5deff851973d2e50f7c590701eb7c398ebe259ec04330be873a3f706bb3c", kill_on_drop: false }` [INFO] [stdout] 469b5deff851973d2e50f7c590701eb7c398ebe259ec04330be873a3f706bb3c