[INFO] cloning repository https://github.com/anshsehgal8/RK4_Orbits [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/anshsehgal8/RK4_Orbits" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fanshsehgal8%2FRK4_Orbits", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fanshsehgal8%2FRK4_Orbits'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9a6f7ebf341632193b05d5a0bf60461932a2d101 [INFO] checking anshsehgal8/RK4_Orbits against master#dfd7b8d03fb93d0e03147d28b3be6d93260fa94d for pr-87050 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fanshsehgal8%2FRK4_Orbits" "/workspace/builds/worker-1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/anshsehgal8/RK4_Orbits on toolchain dfd7b8d03fb93d0e03147d28b3be6d93260fa94d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/anshsehgal8/RK4_Orbits [INFO] finished tweaking git repo https://github.com/anshsehgal8/RK4_Orbits [INFO] tweaked toml for git repo https://github.com/anshsehgal8/RK4_Orbits written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate git repo https://github.com/anshsehgal8/RK4_Orbits already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 817fce2bd393d3452edb8c046065a4e212ab657fae7d54bc995f1b06b2846eeb [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "817fce2bd393d3452edb8c046065a4e212ab657fae7d54bc995f1b06b2846eeb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "817fce2bd393d3452edb8c046065a4e212ab657fae7d54bc995f1b06b2846eeb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "817fce2bd393d3452edb8c046065a4e212ab657fae7d54bc995f1b06b2846eeb", kill_on_drop: false }` [INFO] [stdout] 817fce2bd393d3452edb8c046065a4e212ab657fae7d54bc995f1b06b2846eeb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 209830ac901eaf045d7aa8a690a6a680f0508e6ce191976b6a0a91c86895f207 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "209830ac901eaf045d7aa8a690a6a680f0508e6ce191976b6a0a91c86895f207", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.53 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling hdf5 v0.7.0 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking kepler-two-body v0.1.0 (https://github.com/clemson-cal/kepler-two-body#d42ade30) [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking parking_lot_core v0.7.2 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Compiling regex v1.4.2 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-3a856165a084bfe8/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5556fdcd1970 - std::backtrace_rs::backtrace::libunwind::trace::h706b838f5bbd876b [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x5556fdcd1970 - std::backtrace_rs::backtrace::trace_unsynchronized::hc15f29ae7822b7b8 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5556fdcd1970 - std::sys_common::backtrace::_print_fmt::h7c580c971f91926c [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5556fdcd1970 - ::fmt::h2a772198c4032452 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5556fdcefecc - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/core/src/fmt/mod.rs:1115:17 [INFO] [stderr] 5: 0x5556fdcced85 - std::io::Write::write_fmt::h00f38d9eb2c32e02 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/io/mod.rs:1663:15 [INFO] [stderr] 6: 0x5556fdcd39db - std::sys_common::backtrace::_print::h5b3c171e6f864ae4 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5556fdcd39db - std::sys_common::backtrace::print::h93b9e9ed2a98e611 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5556fdcd39db - std::panicking::default_hook::{{closure}}::hd8da92bb68d520c5 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5556fdcd34b1 - std::panicking::default_hook::hdbc8b2951c5afbab [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x5556fdcd40a4 - std::panicking::rust_panic_with_hook::h8a4c841655926f4e [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x5556fdb00613 - std::panicking::begin_panic::{{closure}}::h704773e85287551d [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:542:9 [INFO] [stderr] 12: 0x5556fdafb759 - std::sys_common::backtrace::__rust_end_short_backtrace::h1bb2a0effa8ed52b [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5556fdb00549 - std::panicking::begin_panic::hc18ed230657216d0 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:541:12 [INFO] [stderr] 14: 0x5556fdad0db7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h01eef2fa5fffdee3 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x5556fdad25db - build_script_build::main::h66f7b633d3ff0d4e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x5556fdad634b - core::ops::function::FnOnce::call_once::h0fea7572554ead72 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x5556fdadca5e - std::sys_common::backtrace::__rust_begin_short_backtrace::h2ec751ffb2551fcc [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x5556fdadaf51 - std::rt::lang_start::{{closure}}::h3d6c8543f02d96b0 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/rt.rs:63:18 [INFO] [stderr] 19: 0x5556fdcd45aa - core::ops::function::impls:: for &F>::call_once::hcbe5785d54a49ce2 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x5556fdcd45aa - std::panicking::try::do_call::h1c15e7ee8563c29d [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:401:40 [INFO] [stderr] 21: 0x5556fdcd45aa - std::panicking::try::hb8b07cef009cb4fc [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:365:19 [INFO] [stderr] 22: 0x5556fdcd45aa - std::panic::catch_unwind::h65a8efbe596bcbb1 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panic.rs:434:14 [INFO] [stderr] 23: 0x5556fdcd45aa - std::rt::lang_start_internal::{{closure}}::h66ded7ab0f18e9fb [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/rt.rs:45:48 [INFO] [stderr] 24: 0x5556fdcd45aa - std::panicking::try::do_call::h29cafa65efb3f3f3 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:401:40 [INFO] [stderr] 25: 0x5556fdcd45aa - std::panicking::try::h412fc5378b4dbfc4 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panicking.rs:365:19 [INFO] [stderr] 26: 0x5556fdcd45aa - std::panic::catch_unwind::h555def6aac5bf192 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/panic.rs:434:14 [INFO] [stderr] 27: 0x5556fdcd45aa - std::rt::lang_start_internal::hfff48202d7fee6e3 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/rt.rs:45:20 [INFO] [stderr] 28: 0x5556fdadaf20 - std::rt::lang_start::h2deee01a32d48465 [INFO] [stderr] at /rustc/dfd7b8d03fb93d0e03147d28b3be6d93260fa94d/library/std/src/rt.rs:62:5 [INFO] [stderr] 29: 0x5556fdad3acc - main [INFO] [stderr] 30: 0x7fc572b580b3 - __libc_start_main [INFO] [stderr] 31: 0x5556fdacbf2e - _start [INFO] [stderr] 32: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "209830ac901eaf045d7aa8a690a6a680f0508e6ce191976b6a0a91c86895f207", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "209830ac901eaf045d7aa8a690a6a680f0508e6ce191976b6a0a91c86895f207", kill_on_drop: false }` [INFO] [stdout] 209830ac901eaf045d7aa8a690a6a680f0508e6ce191976b6a0a91c86895f207