[INFO] cloning repository https://github.com/AlbertGevorgyan/seqognize [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/AlbertGevorgyan/seqognize" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAlbertGevorgyan%2Fseqognize", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAlbertGevorgyan%2Fseqognize'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9dfa91e040276a02ab8401773dd7f722703586b3 [INFO] checking AlbertGevorgyan/seqognize against master#dfd7b8d03fb93d0e03147d28b3be6d93260fa94d for pr-87050 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAlbertGevorgyan%2Fseqognize" "/workspace/builds/worker-12/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-12/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/AlbertGevorgyan/seqognize on toolchain dfd7b8d03fb93d0e03147d28b3be6d93260fa94d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/AlbertGevorgyan/seqognize [INFO] finished tweaking git repo https://github.com/AlbertGevorgyan/seqognize [INFO] tweaked toml for git repo https://github.com/AlbertGevorgyan/seqognize written to /workspace/builds/worker-12/source/Cargo.toml [INFO] crate git repo https://github.com/AlbertGevorgyan/seqognize already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f595352cfe2e31642b58e460104926e3ef37937d4da753e3fde7845d078493f1 [INFO] running `Command { std: "docker" "start" "-a" "f595352cfe2e31642b58e460104926e3ef37937d4da753e3fde7845d078493f1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f595352cfe2e31642b58e460104926e3ef37937d4da753e3fde7845d078493f1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f595352cfe2e31642b58e460104926e3ef37937d4da753e3fde7845d078493f1", kill_on_drop: false }` [INFO] [stdout] f595352cfe2e31642b58e460104926e3ef37937d4da753e3fde7845d078493f1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4c6759e718a24f18678ff3e5b79031bcb7614a643a73e4a830ccf596cc491667 [INFO] running `Command { std: "docker" "start" "-a" "4c6759e718a24f18678ff3e5b79031bcb7614a643a73e4a830ccf596cc491667", kill_on_drop: false }` [INFO] [stderr] Compiling const_fn v0.4.3 [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling syn v1.0.46 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Compiling ndarray v0.10.14 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking array2d v0.2.1 [INFO] [stderr] Checking regex-syntax v0.6.21 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling crossbeam-utils v0.8.0 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking serde_json v1.0.59 [INFO] [stderr] Checking serde_cbor v0.11.1 [INFO] [stderr] Checking bstr v0.2.14 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Compiling cast v0.2.3 [INFO] [stderr] Checking tinytemplate v1.1.0 [INFO] [stderr] Checking regex v1.4.2 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking crossbeam-epoch v0.9.0 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Checking criterion-plot v0.4.3 [INFO] [stderr] Checking num-traits v0.1.43 [INFO] [stderr] Checking num-complex v0.1.43 [INFO] [stderr] Checking plotters v0.2.15 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking rayon-core v1.9.0 [INFO] [stderr] Compiling delegate v0.4.3 [INFO] [stderr] Compiling serde_derive v1.0.117 [INFO] [stderr] Checking seqognize v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `pos` [INFO] [stdout] --> src/nt_aligner.rs:18:38 [INFO] [stdout] | [INFO] [stdout] 18 | fn get_substitution_score(&self, pos: (usize, usize), s: u8, r: u8) -> FScore { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_pos` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pos` [INFO] [stdout] --> src/nt_aligner.rs:21:47 [INFO] [stdout] | [INFO] [stdout] 21 | fn get_subject_gap_opening_penalty(&self, pos: usize) -> FScore { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_pos` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pos` [INFO] [stdout] --> src/nt_aligner.rs:24:49 [INFO] [stdout] | [INFO] [stdout] 24 | fn get_reference_gap_opening_penalty(&self, pos: usize) -> FScore { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_pos` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `from_elements` [INFO] [stdout] --> src/matrix.rs:59:8 [INFO] [stdout] | [INFO] [stdout] 59 | pub fn from_elements(elements: &[V]) -> Matrix [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pos` [INFO] [stdout] --> src/nt_aligner.rs:18:38 [INFO] [stdout] | [INFO] [stdout] 18 | fn get_substitution_score(&self, pos: (usize, usize), s: u8, r: u8) -> FScore { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_pos` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pos` [INFO] [stdout] --> src/nt_aligner.rs:21:47 [INFO] [stdout] | [INFO] [stdout] 21 | fn get_subject_gap_opening_penalty(&self, pos: usize) -> FScore { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_pos` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pos` [INFO] [stdout] --> src/nt_aligner.rs:24:49 [INFO] [stdout] | [INFO] [stdout] 24 | fn get_reference_gap_opening_penalty(&self, pos: usize) -> FScore { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_pos` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `from_elements` [INFO] [stdout] --> src/matrix.rs:59:8 [INFO] [stdout] | [INFO] [stdout] 59 | pub fn from_elements(elements: &[V]) -> Matrix [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `from` [INFO] [stdout] --> src/alignment.rs:17:12 [INFO] [stdout] | [INFO] [stdout] 17 | pub fn from(subject: &str, reference: &str, score: FScore) -> Self { [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Checking criterion v0.3.3 [INFO] [stdout] warning: unused variable: `pos` [INFO] [stdout] --> src/nt_aligner.rs:18:38 [INFO] [stdout] | [INFO] [stdout] 18 | fn get_substitution_score(&self, pos: (usize, usize), s: u8, r: u8) -> FScore { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_pos` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pos` [INFO] [stdout] --> src/nt_aligner.rs:21:47 [INFO] [stdout] | [INFO] [stdout] 21 | fn get_subject_gap_opening_penalty(&self, pos: usize) -> FScore { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_pos` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pos` [INFO] [stdout] --> src/nt_aligner.rs:24:49 [INFO] [stdout] | [INFO] [stdout] 24 | fn get_reference_gap_opening_penalty(&self, pos: usize) -> FScore { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_pos` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pos` [INFO] [stdout] --> src/nt_aligner.rs:18:38 [INFO] [stdout] | [INFO] [stdout] 18 | fn get_substitution_score(&self, pos: (usize, usize), s: u8, r: u8) -> FScore { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_pos` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pos` [INFO] [stdout] --> src/nt_aligner.rs:21:47 [INFO] [stdout] | [INFO] [stdout] 21 | fn get_subject_gap_opening_penalty(&self, pos: usize) -> FScore { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_pos` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pos` [INFO] [stdout] --> src/nt_aligner.rs:24:49 [INFO] [stdout] | [INFO] [stdout] 24 | fn get_reference_gap_opening_penalty(&self, pos: usize) -> FScore { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_pos` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 30.86s [INFO] running `Command { std: "docker" "inspect" "4c6759e718a24f18678ff3e5b79031bcb7614a643a73e4a830ccf596cc491667", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4c6759e718a24f18678ff3e5b79031bcb7614a643a73e4a830ccf596cc491667", kill_on_drop: false }` [INFO] [stdout] 4c6759e718a24f18678ff3e5b79031bcb7614a643a73e4a830ccf596cc491667