[INFO] cloning repository https://github.com/38/limo [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/limo" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Flimo", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Flimo'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] af36692099cf4fa891e60cbcc07cba85f878656c [INFO] checking 38/limo against master#dfd7b8d03fb93d0e03147d28b3be6d93260fa94d for pr-87050 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Flimo" "/workspace/builds/worker-3/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/limo on toolchain dfd7b8d03fb93d0e03147d28b3be6d93260fa94d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/limo [INFO] finished tweaking git repo https://github.com/38/limo [INFO] tweaked toml for git repo https://github.com/38/limo written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate git repo https://github.com/38/limo already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: the cargo feature `profile-overrides` has been stabilized in the 1.41 release and is no longer necessary to be listed in the manifest [INFO] [stderr] See https://doc.rust-lang.org/nightly/cargo/reference/profiles.html#overrides for more information about using this feature. [INFO] [stderr] warning: unused manifest key: profile.dev.overrides [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 623acb2e8b2b40121de52aac3edb6d0d43770534c0983e18c050d228907aa196 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "623acb2e8b2b40121de52aac3edb6d0d43770534c0983e18c050d228907aa196", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "623acb2e8b2b40121de52aac3edb6d0d43770534c0983e18c050d228907aa196", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "623acb2e8b2b40121de52aac3edb6d0d43770534c0983e18c050d228907aa196", kill_on_drop: false }` [INFO] [stdout] 623acb2e8b2b40121de52aac3edb6d0d43770534c0983e18c050d228907aa196 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+dfd7b8d03fb93d0e03147d28b3be6d93260fa94d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] e35d58ae1adc8e68ddee3fe5fdbe15a21a8be4489e7a582597d85e226305e8c7 [INFO] running `Command { std: "docker" "start" "-a" "e35d58ae1adc8e68ddee3fe5fdbe15a21a8be4489e7a582597d85e226305e8c7", kill_on_drop: false }` [INFO] [stderr] warning: the cargo feature `profile-overrides` has been stabilized in the 1.41 release and is no longer necessary to be listed in the manifest [INFO] [stderr] See https://doc.rust-lang.org/nightly/cargo/reference/profiles.html#overrides for more information about using this feature. [INFO] [stderr] warning: unused manifest key: profile.dev.overrides [INFO] [stderr] Compiling cfg-if v0.1.5 [INFO] [stderr] Compiling regex v1.0.5 [INFO] [stderr] Compiling ucd-util v0.1.1 [INFO] [stderr] Compiling utf8-ranges v1.0.1 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling bindgen v0.42.1 [INFO] [stderr] Compiling proc-macro2 v0.4.24 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling memchr v2.1.0 [INFO] [stderr] Compiling lazy_static v1.1.0 [INFO] [stderr] Compiling libloading v0.5.0 [INFO] [stderr] Compiling clang-sys v0.26.0 [INFO] [stderr] Compiling proc-macro2 v0.3.5 [INFO] [stderr] Checking time v0.1.42 [INFO] [stderr] Checking num_cpus v1.8.0 [INFO] [stderr] Checking atty v0.2.11 [INFO] [stderr] Checking regex-syntax v0.6.2 [INFO] [stderr] Checking textwrap v0.10.0 [INFO] [stderr] Compiling log v0.4.5 [INFO] [stderr] Checking ryu v0.2.7 [INFO] [stderr] Checking threadpool v1.7.1 [INFO] [stderr] Compiling quote v0.5.2 [INFO] [stderr] Checking clap v2.32.0 [INFO] [stderr] Checking chrono v0.4.6 [INFO] [stderr] Checking serde_json v1.0.33 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Checking aho-corasick v0.6.8 [INFO] [stderr] Compiling nom v4.1.0 [INFO] [stderr] Compiling quote v0.6.10 [INFO] [stderr] Compiling syn v0.15.22 [INFO] [stderr] Checking stderrlog v0.4.1 [INFO] [stderr] Compiling cexpr v0.3.0 [INFO] [stderr] Compiling env_logger v0.5.13 [INFO] [stderr] Compiling serde_derive v1.0.80 [INFO] [stderr] Compiling frontend v0.1.0 (/opt/rustwide/workdir/libs/frontend) [INFO] [stdout] warning: unnecessary parentheses around block return value [INFO] [stdout] --> libs/frontend/src/bamfile.rs:360:27 [INFO] [stdout] | [INFO] [stdout] 360 | let len = unsafe{ (*(*hdr).target_len.offset(chrom as isize)) }; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: getting the inner pointer of a temporary `CString` [INFO] [stdout] --> libs/frontend/src/bamfile.rs:298:50 [INFO] [stdout] | [INFO] [stdout] 298 | hts_open(CString::new(path).unwrap().as_ptr(), [INFO] [stdout] | --------------------------- ^^^^^^ this pointer will be invalid [INFO] [stdout] | | [INFO] [stdout] | this `CString` is deallocated at the end of the statement, bind it to a variable to extend its lifetime [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(temporary_cstring_as_ptr)]` on by default [INFO] [stdout] = note: pointers do not have a lifetime; when calling `as_ptr` the `CString` will be deallocated at the end of the statement because nothing is referencing it as far as the type system is concerned [INFO] [stdout] = help: for more information, see https://doc.rust-lang.org/reference/destructors.html [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: getting the inner pointer of a temporary `CString` [INFO] [stdout] --> libs/frontend/src/bamfile.rs:299:50 [INFO] [stdout] | [INFO] [stdout] 299 | CString::new("rb").unwrap().as_ptr()) [INFO] [stdout] | --------------------------- ^^^^^^ this pointer will be invalid [INFO] [stdout] | | [INFO] [stdout] | this `CString` is deallocated at the end of the statement, bind it to a variable to extend its lifetime [INFO] [stdout] | [INFO] [stdout] = note: pointers do not have a lifetime; when calling `as_ptr` the `CString` will be deallocated at the end of the statement because nothing is referencing it as far as the type system is concerned [INFO] [stdout] = help: for more information, see https://doc.rust-lang.org/reference/destructors.html [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: getting the inner pointer of a temporary `CString` [INFO] [stdout] --> libs/frontend/src/bamfile.rs:325:50 [INFO] [stdout] | [INFO] [stdout] 325 | hts_open(CString::new(path).unwrap().as_ptr(), [INFO] [stdout] | --------------------------- ^^^^^^ this pointer will be invalid [INFO] [stdout] | | [INFO] [stdout] | this `CString` is deallocated at the end of the statement, bind it to a variable to extend its lifetime [INFO] [stdout] | [INFO] [stdout] = note: pointers do not have a lifetime; when calling `as_ptr` the `CString` will be deallocated at the end of the statement because nothing is referencing it as far as the type system is concerned [INFO] [stdout] = help: for more information, see https://doc.rust-lang.org/reference/destructors.html [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: getting the inner pointer of a temporary `CString` [INFO] [stdout] --> libs/frontend/src/bamfile.rs:326:50 [INFO] [stdout] | [INFO] [stdout] 326 | CString::new("rb").unwrap().as_ptr()) [INFO] [stdout] | --------------------------- ^^^^^^ this pointer will be invalid [INFO] [stdout] | | [INFO] [stdout] | this `CString` is deallocated at the end of the statement, bind it to a variable to extend its lifetime [INFO] [stdout] | [INFO] [stdout] = note: pointers do not have a lifetime; when calling `as_ptr` the `CString` will be deallocated at the end of the statement because nothing is referencing it as far as the type system is concerned [INFO] [stdout] = help: for more information, see https://doc.rust-lang.org/reference/destructors.html [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: getting the inner pointer of a temporary `CString` [INFO] [stdout] --> libs/frontend/src/bamfile.rs:337:91 [INFO] [stdout] | [INFO] [stdout] 337 | if unsafe{ hts_set_fai_filename(fp, CString::new(reference.unwrap()).unwrap().as_ptr()) } < 0 [INFO] [stdout] | ----------------------------------------- ^^^^^^ this pointer will be invalid [INFO] [stdout] | | [INFO] [stdout] | this `CString` is deallocated at the end of the statement, bind it to a variable to extend its lifetime [INFO] [stdout] | [INFO] [stdout] = note: pointers do not have a lifetime; when calling `as_ptr` the `CString` will be deallocated at the end of the statement because nothing is referencing it as far as the type system is concerned [INFO] [stdout] = help: for more information, see https://doc.rust-lang.org/reference/destructors.html [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: getting the inner pointer of a temporary `CString` [INFO] [stdout] --> libs/frontend/src/bamfile.rs:352:75 [INFO] [stdout] | [INFO] [stdout] 352 | let idx = unsafe { sam_index_load(fp, CString::new(path).unwrap().as_ptr()) }; [INFO] [stdout] | --------------------------- ^^^^^^ this pointer will be invalid [INFO] [stdout] | | [INFO] [stdout] | this `CString` is deallocated at the end of the statement, bind it to a variable to extend its lifetime [INFO] [stdout] | [INFO] [stdout] = note: pointers do not have a lifetime; when calling `as_ptr` the `CString` will be deallocated at the end of the statement because nothing is referencing it as far as the type system is concerned [INFO] [stdout] = help: for more information, see https://doc.rust-lang.org/reference/destructors.html [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 7 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Checking limo v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/task.rs:127:26 [INFO] [stdout] | [INFO] [stdout] 127 | }; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary trailing semicolon [INFO] [stdout] --> src/task.rs:127:26 [INFO] [stdout] | [INFO] [stdout] 127 | }; [INFO] [stdout] | ^ help: remove this semicolon [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(redundant_semicolons)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 41s [INFO] running `Command { std: "docker" "inspect" "e35d58ae1adc8e68ddee3fe5fdbe15a21a8be4489e7a582597d85e226305e8c7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e35d58ae1adc8e68ddee3fe5fdbe15a21a8be4489e7a582597d85e226305e8c7", kill_on_drop: false }` [INFO] [stdout] e35d58ae1adc8e68ddee3fe5fdbe15a21a8be4489e7a582597d85e226305e8c7