[INFO] cloning repository https://github.com/stjude/fqlib [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stjude/fqlib" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 3a89f3135627896c1030902d6fd8ce5789b50b8a [INFO] testing stjude/fqlib against try#ecabaf78506b7a4668d42dc20268c086b93f0fad for pr-87041 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib" "/workspace/builds/worker-5/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/stjude/fqlib on toolchain ecabaf78506b7a4668d42dc20268c086b93f0fad [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/stjude/fqlib [INFO] finished tweaking git repo https://github.com/stjude/fqlib [INFO] tweaked toml for git repo https://github.com/stjude/fqlib written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate git repo https://github.com/stjude/fqlib already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/zaeleus/bbloom.git` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded no-std-compat v0.4.1 [INFO] [stderr] Downloaded git-testament-derive v0.1.12 [INFO] [stderr] Downloaded tracing-subscriber v0.2.18 [INFO] [stderr] Downloaded git-testament v0.2.0 [INFO] [stderr] Downloaded rand_distr v0.4.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] fe6b16cd54a01be34745ef7534383784310606f902863d3ee161ed1a7dfd2166 [INFO] running `Command { std: "docker" "start" "-a" "fe6b16cd54a01be34745ef7534383784310606f902863d3ee161ed1a7dfd2166", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "fe6b16cd54a01be34745ef7534383784310606f902863d3ee161ed1a7dfd2166", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fe6b16cd54a01be34745ef7534383784310606f902863d3ee161ed1a7dfd2166", kill_on_drop: false }` [INFO] [stdout] fe6b16cd54a01be34745ef7534383784310606f902863d3ee161ed1a7dfd2166 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 6595cff42d1de0b06f83cd97a592f96dfe0ee9b87d2e72524c71a9210336ed02 [INFO] running `Command { std: "docker" "start" "-a" "6595cff42d1de0b06f83cd97a592f96dfe0ee9b87d2e72524c71a9210336ed02", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.27 [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.73 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling serde v1.0.126 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling serde_json v1.0.64 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling anyhow v1.0.41 [INFO] [stderr] Compiling itoa v0.4.7 [INFO] [stderr] Compiling pin-project-lite v0.2.6 [INFO] [stderr] Compiling once_cell v1.8.0 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling smallvec v1.6.1 [INFO] [stderr] Compiling no-std-compat v0.4.1 [INFO] [stderr] Compiling bit-vec v0.5.1 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling thread_local v1.1.3 [INFO] [stderr] Compiling tracing-core v0.1.18 [INFO] [stderr] Compiling sharded-slab v0.1.1 [INFO] [stderr] Compiling getrandom v0.2.3 [INFO] [stderr] Compiling time v0.1.43 [INFO] [stderr] Compiling bbloom v0.1.0 (https://github.com/zaeleus/bbloom.git?tag=v0.1.0#2c9f6163) [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling tracing-log v0.1.2 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling flate2 v1.0.20 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling rand_distr v0.4.1 [INFO] [stderr] Compiling chrono v0.4.19 [INFO] [stderr] Compiling matchers v0.0.1 [INFO] [stderr] Compiling tracing-serde v0.1.2 [INFO] [stderr] Compiling tracing-attributes v0.1.15 [INFO] [stderr] Compiling git-testament-derive v0.1.12 [INFO] [stderr] Compiling git-testament v0.2.0 [INFO] [stderr] Compiling tracing v0.1.26 [INFO] [stderr] Compiling tracing-subscriber v0.2.18 [INFO] [stderr] Compiling fqlib v0.7.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 33.83s [INFO] running `Command { std: "docker" "inspect" "6595cff42d1de0b06f83cd97a592f96dfe0ee9b87d2e72524c71a9210336ed02", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6595cff42d1de0b06f83cd97a592f96dfe0ee9b87d2e72524c71a9210336ed02", kill_on_drop: false }` [INFO] [stdout] 6595cff42d1de0b06f83cd97a592f96dfe0ee9b87d2e72524c71a9210336ed02 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 6ebcb1bf39ae1b393e14ecfb58c3df5374742e61cfb1c0359287c2ab98f54253 [INFO] running `Command { std: "docker" "start" "-a" "6ebcb1bf39ae1b393e14ecfb58c3df5374742e61cfb1c0359287c2ab98f54253", kill_on_drop: false }` [INFO] [stderr] Compiling fqlib v0.7.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 3.34s [INFO] running `Command { std: "docker" "inspect" "6ebcb1bf39ae1b393e14ecfb58c3df5374742e61cfb1c0359287c2ab98f54253", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6ebcb1bf39ae1b393e14ecfb58c3df5374742e61cfb1c0359287c2ab98f54253", kill_on_drop: false }` [INFO] [stdout] 6ebcb1bf39ae1b393e14ecfb58c3df5374742e61cfb1c0359287c2ab98f54253 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 7745b3cff8cb02153367737301b46a630f9fefc62667bac3ec5699dac19825bb [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "7745b3cff8cb02153367737301b46a630f9fefc62667bac3ec5699dac19825bb", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.08s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fqlib-c586585e77327f6e) [INFO] [stdout] running 53 tests [INFO] [stdout] test commands::filter::tests::test_copy_filtered ... ok [INFO] [stdout] test commands::filter::tests::test_name_id ... ok [INFO] [stdout] test distributions::character::tests::test_sample ... ok [INFO] [stdout] test fastq::reader::tests::test_read_record ... ok [INFO] [stdout] test generator::builder::tests::test_build ... ok [INFO] [stdout] test commands::filter::tests::test_read_names ... ok [INFO] [stdout] test fastq::record::tests::test_clear ... ok [INFO] [stdout] test validators::paired::names::tests::test_code ... ok [INFO] [stdout] test fastq::writer::tests::test_write_record ... ok [INFO] [stdout] test fastq::reader::tests::test_read_line ... ok [INFO] [stdout] test generator::tests::test_next_record ... ok [INFO] [stdout] test generator::tests::test_next_record_with_read_length ... ok [INFO] [stdout] test commands::lint::tests::test_build_error_message ... ok [INFO] [stdout] test validators::paired::names::tests::test_level ... ok [INFO] [stdout] test validators::paired::names::tests::test_name ... ok [INFO] [stdout] test distributions::quality_scores::tests::test_clamp ... ok [INFO] [stdout] test commands::lint::tests::test_build_error_message_with_no_col_no ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_code ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_level ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_name ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_name ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_validate ... ok [INFO] [stdout] test validators::paired::names::tests::test_validate ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_is_empty ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_level ... ok [INFO] [stdout] test validators::single::name::tests::test_level ... ok [INFO] [stdout] test validators::single::complete::tests::test_code ... ok [INFO] [stdout] test validators::single::name::tests::test_validate ... ok [INFO] [stdout] test validators::single::complete::tests::test_validate ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_level ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_code ... ok [INFO] [stdout] test validators::single::name::tests::test_name ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_validate ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_name ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_code ... ok [INFO] [stdout] test validators::single::complete::tests::test_level ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_level ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_name ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_validate ... ok [INFO] [stdout] test validators::tests::test_filter_paired_read_validators ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_new ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_level ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_code ... ok [INFO] [stdout] test validators::single::complete::tests::test_name ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_name ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_validate ... ok [INFO] [stdout] test validators::tests::test_filter_single_read_validators ... ok [INFO] [stdout] test validators::tests::test_filter_validators ... ok [INFO] [stdout] test validators::tests::test_filter_single_read_validators_with_disabled_validators ... ok [INFO] [stdout] test validators::validation_level::tests::test_from_str ... ok [INFO] [stdout] test validators::tests::test_filter_paired_read_validators_with_disabled_validators ... ok [INFO] [stdout] test validators::single::name::tests::test_code ... ok [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/fq-b012ab170e21907c) [INFO] [stdout] test validators::single::duplicate_name::tests::test_code ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 53 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests fqlib [INFO] [stdout] [INFO] [stdout] running 9 tests [INFO] [stderr] error: test failed, to rerun pass '--doc' [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `rustdoc --edition=2018 --crate-type lib --crate-name fqlib --test /opt/rustwide/workdir/src/lib.rs -L dependency=/opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern anyhow=/opt/rustwide/target/debug/deps/libanyhow-8aac79b2f754f7a1.rlib --extern bbloom=/opt/rustwide/target/debug/deps/libbbloom-f26294770048a577.rlib --extern clap=/opt/rustwide/target/debug/deps/libclap-eade02e53dcdf501.rlib --extern flate2=/opt/rustwide/target/debug/deps/libflate2-2c7ffad84acd3810.rlib --extern fqlib=/opt/rustwide/target/debug/deps/libfqlib-3b337d75fae03719.rlib --extern git_testament=/opt/rustwide/target/debug/deps/libgit_testament-48dfa8b4dc9d0068.rlib --extern rand=/opt/rustwide/target/debug/deps/librand-8ba8cfdbf51f1a47.rlib --extern rand_distr=/opt/rustwide/target/debug/deps/librand_distr-855d148fde227ed0.rlib --extern tracing=/opt/rustwide/target/debug/deps/libtracing-bac0f2439b767eb5.rlib --extern tracing_subscriber=/opt/rustwide/target/debug/deps/libtracing_subscriber-c44a322a625cd4b7.rlib -C embed-bitcode=no --error-format human` (signal: 9, SIGKILL: kill) [INFO] running `Command { std: "docker" "inspect" "7745b3cff8cb02153367737301b46a630f9fefc62667bac3ec5699dac19825bb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7745b3cff8cb02153367737301b46a630f9fefc62667bac3ec5699dac19825bb", kill_on_drop: false }` [INFO] [stdout] 7745b3cff8cb02153367737301b46a630f9fefc62667bac3ec5699dac19825bb