[INFO] cloning repository https://github.com/preiter93/ndspectral [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/preiter93/ndspectral" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpreiter93%2Fndspectral", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpreiter93%2Fndspectral'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 973031ac599c26158f21d5316afca045b01a5b2d [INFO] testing preiter93/ndspectral against try#ecabaf78506b7a4668d42dc20268c086b93f0fad for pr-87041 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpreiter93%2Fndspectral" "/workspace/builds/worker-13/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-13/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/preiter93/ndspectral on toolchain ecabaf78506b7a4668d42dc20268c086b93f0fad [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/preiter93/ndspectral [INFO] finished tweaking git repo https://github.com/preiter93/ndspectral [INFO] tweaked toml for git repo https://github.com/preiter93/ndspectral written to /workspace/builds/worker-13/source/Cargo.toml [INFO] crate git repo https://github.com/preiter93/ndspectral already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7e96c0c77b64d91d87f6fa1473d1d213814c30e9227df322245b38a9abedd677 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "7e96c0c77b64d91d87f6fa1473d1d213814c30e9227df322245b38a9abedd677", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7e96c0c77b64d91d87f6fa1473d1d213814c30e9227df322245b38a9abedd677", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7e96c0c77b64d91d87f6fa1473d1d213814c30e9227df322245b38a9abedd677", kill_on_drop: false }` [INFO] [stdout] 7e96c0c77b64d91d87f6fa1473d1d213814c30e9227df322245b38a9abedd677 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 4c7e6a584f3aa778e263443c2bfeaed985fed2045c37dbf95b98891ecd088e26 [INFO] running `Command { std: "docker" "start" "-a" "4c7e6a584f3aa778e263443c2bfeaed985fed2045c37dbf95b98891ecd088e26", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling proc-macro2 v1.0.27 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.73 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling ndarray v0.14.0 [INFO] [stderr] Compiling strength_reduce v0.2.3 [INFO] [stderr] Compiling blas-src v0.6.1 [INFO] [stderr] Compiling smallvec v1.6.1 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling once_cell v1.8.0 [INFO] [stderr] Compiling hdf5 v0.7.1 [INFO] [stderr] Compiling ascii v1.0.0 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling walkdir v2.3.2 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling matrixmultiply v0.3.1 [INFO] [stderr] Compiling matrixmultiply v0.2.4 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Compiling instant v0.1.9 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling lock_api v0.4.4 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling dirs-sys v0.3.6 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling cblas-sys v0.1.4 [INFO] [stderr] Compiling lapack-sys v0.12.1 [INFO] [stderr] Compiling hdf5-types v0.7.1 [INFO] [stderr] Compiling parking_lot_core v0.8.3 [INFO] [stderr] Compiling num-complex v0.4.0 [INFO] [stderr] Compiling approx v0.4.0 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling dirs v3.0.2 [INFO] [stderr] Compiling crossbeam-channel v0.5.1 [INFO] [stderr] Compiling parking_lot v0.11.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling transpose v0.2.1 [INFO] [stderr] Compiling primal-check v0.3.1 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling rustfft v6.0.1 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling num-complex v0.3.1 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling lapack v0.17.0 [INFO] [stderr] Compiling cauchy v0.3.0 [INFO] [stderr] Compiling ndarray v0.15.3 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-5d103b5c69600da3/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55de6e469130 - std::backtrace_rs::backtrace::libunwind::trace::h706b838f5bbd876b [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55de6e469130 - std::backtrace_rs::backtrace::trace_unsynchronized::hc15f29ae7822b7b8 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55de6e469130 - std::sys_common::backtrace::_print_fmt::h7c580c971f91926c [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55de6e469130 - ::fmt::h2a772198c4032452 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55de6e48768c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/core/src/fmt/mod.rs:1115:17 [INFO] [stderr] 5: 0x55de6e466545 - std::io::Write::write_fmt::h00f38d9eb2c32e02 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/io/mod.rs:1663:15 [INFO] [stderr] 6: 0x55de6e46b19b - std::sys_common::backtrace::_print::h5b3c171e6f864ae4 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55de6e46b19b - std::sys_common::backtrace::print::h93b9e9ed2a98e611 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55de6e46b19b - std::panicking::default_hook::{{closure}}::hd8da92bb68d520c5 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55de6e46ac71 - std::panicking::default_hook::hdbc8b2951c5afbab [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55de6e46b864 - std::panicking::rust_panic_with_hook::h8a4c841655926f4e [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x55de6e2935c3 - std::panicking::begin_panic::{{closure}}::h704773e85287551d [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/panicking.rs:542:9 [INFO] [stderr] 12: 0x55de6e28e709 - std::sys_common::backtrace::__rust_end_short_backtrace::h1bb2a0effa8ed52b [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55de6e2934f9 - std::panicking::begin_panic::hc18ed230657216d0 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/panicking.rs:541:12 [INFO] [stderr] 14: 0x55de6e263ed7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::ha71e43a7aff2219e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x55de6e2656fb - build_script_build::main::h262d9f8c7f3f5dfb [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x55de6e26954b - core::ops::function::FnOnce::call_once::h90d0e9c082a19a57 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55de6e26fa6e - std::sys_common::backtrace::__rust_begin_short_backtrace::h8f38d4507e045c95 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55de6e26dfc1 - std::rt::lang_start::{{closure}}::h668f1a2fe248cef8 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/rt.rs:63:18 [INFO] [stderr] 19: 0x55de6e46bd6a - core::ops::function::impls:: for &F>::call_once::hcbe5785d54a49ce2 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55de6e46bd6a - std::panicking::try::do_call::h1c15e7ee8563c29d [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/panicking.rs:401:40 [INFO] [stderr] 21: 0x55de6e46bd6a - std::panicking::try::hb8b07cef009cb4fc [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/panicking.rs:365:19 [INFO] [stderr] 22: 0x55de6e46bd6a - std::panic::catch_unwind::h65a8efbe596bcbb1 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/panic.rs:434:14 [INFO] [stderr] 23: 0x55de6e46bd6a - std::rt::lang_start_internal::{{closure}}::h66ded7ab0f18e9fb [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/rt.rs:45:48 [INFO] [stderr] 24: 0x55de6e46bd6a - std::panicking::try::do_call::h29cafa65efb3f3f3 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/panicking.rs:401:40 [INFO] [stderr] 25: 0x55de6e46bd6a - std::panicking::try::h412fc5378b4dbfc4 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/panicking.rs:365:19 [INFO] [stderr] 26: 0x55de6e46bd6a - std::panic::catch_unwind::h555def6aac5bf192 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/panic.rs:434:14 [INFO] [stderr] 27: 0x55de6e46bd6a - std::rt::lang_start_internal::hfff48202d7fee6e3 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/rt.rs:45:20 [INFO] [stderr] 28: 0x55de6e26df90 - std::rt::lang_start::h60d49805b26b4106 [INFO] [stderr] at /rustc/ecabaf78506b7a4668d42dc20268c086b93f0fad/library/std/src/rt.rs:62:5 [INFO] [stderr] 29: 0x55de6e266bec - main [INFO] [stderr] 30: 0x7fd3536840b3 - __libc_start_main [INFO] [stderr] 31: 0x55de6e25ef2e - _start [INFO] [stderr] 32: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "4c7e6a584f3aa778e263443c2bfeaed985fed2045c37dbf95b98891ecd088e26", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4c7e6a584f3aa778e263443c2bfeaed985fed2045c37dbf95b98891ecd088e26", kill_on_drop: false }` [INFO] [stdout] 4c7e6a584f3aa778e263443c2bfeaed985fed2045c37dbf95b98891ecd088e26