[INFO] cloning repository https://github.com/natir/ssik [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/natir/ssik" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Fssik", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Fssik'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] bbb5b202fa987b7004ceb5140e9c81b859874617 [INFO] testing natir/ssik against try#ecabaf78506b7a4668d42dc20268c086b93f0fad for pr-87041 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Fssik" "/workspace/builds/worker-1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/natir/ssik on toolchain ecabaf78506b7a4668d42dc20268c086b93f0fad [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/natir/ssik [INFO] finished tweaking git repo https://github.com/natir/ssik [INFO] tweaked toml for git repo https://github.com/natir/ssik written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate git repo https://github.com/natir/ssik already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/natir/cocktail.git` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded funty v1.2.0 [INFO] [stderr] Downloaded bio-types v0.10.0 [INFO] [stderr] Downloaded bio v0.32.0 [INFO] [stderr] Downloaded bitvec v0.21.0 [INFO] [stderr] Downloaded newtype_derive v0.1.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 961f7082b7dd4b7e82415cd259abb489cafe94c0eacc725a9153000bd4bb3cf7 [INFO] running `Command { std: "docker" "start" "-a" "961f7082b7dd4b7e82415cd259abb489cafe94c0eacc725a9153000bd4bb3cf7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "961f7082b7dd4b7e82415cd259abb489cafe94c0eacc725a9153000bd4bb3cf7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "961f7082b7dd4b7e82415cd259abb489cafe94c0eacc725a9153000bd4bb3cf7", kill_on_drop: false }` [INFO] [stdout] 961f7082b7dd4b7e82415cd259abb489cafe94c0eacc725a9153000bd4bb3cf7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] fa54a04d03b377f7f0204829254e9a64c03a8f729d6762d495d56c945ac4fa05 [INFO] running `Command { std: "docker" "start" "-a" "fa54a04d03b377f7f0204829254e9a64c03a8f729d6762d495d56c945ac4fa05", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.86 [INFO] [stderr] Compiling serde_derive v1.0.123 [INFO] [stderr] Compiling cc v1.0.67 [INFO] [stderr] Compiling serde v1.0.123 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling once_cell v1.7.0 [INFO] [stderr] Compiling byteorder v1.4.2 [INFO] [stderr] Compiling regex-syntax v0.6.22 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling radium v0.6.2 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Compiling array-macro v1.0.5 [INFO] [stderr] Compiling fixedbitset v0.2.0 [INFO] [stderr] Compiling anyhow v1.0.38 [INFO] [stderr] Compiling newtype_derive v0.1.4 [INFO] [stderr] Compiling triple_accel v0.3.4 [INFO] [stderr] Compiling funty v1.2.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling os_str_bytes v2.4.0 [INFO] [stderr] Compiling strum v0.18.0 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling cocktail v0.1.0 (https://github.com/natir/cocktail.git#bf6c4542) [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling indexmap v1.6.1 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling addr2line v0.14.1 [INFO] [stderr] Compiling matrixmultiply v0.2.4 [INFO] [stderr] Compiling textwrap v0.12.1 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.3 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling syn v1.0.60 [INFO] [stderr] Compiling thread_local v1.1.3 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.3 [INFO] [stderr] Compiling crossbeam-channel v0.5.0 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling bitvec v0.21.0 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling bzip2-sys v0.1.10+1.0.8 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling ordered-float v1.1.1 [INFO] [stderr] Compiling enum_primitive v0.1.1 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling backtrace v0.3.56 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling flate2 v1.0.20 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling term_size v0.3.2 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling bzip2 v0.4.2 [INFO] [stderr] Compiling regex v1.4.3 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling thiserror-impl v1.0.24 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling clap_derive v3.0.0-beta.2 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling enum-map v0.6.4 [INFO] [stderr] Compiling bgzip v0.1.0 [INFO] [stderr] Compiling bio-types v0.10.0 [INFO] [stderr] Compiling thiserror v1.0.24 [INFO] [stderr] Compiling niffler v2.3.1 [INFO] [stderr] Compiling snafu v0.6.10 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bstr v0.2.15 [INFO] [stderr] Compiling multimap v0.8.2 [INFO] [stderr] Compiling clap v3.0.0-beta.2 [INFO] [stderr] Compiling csv v1.1.5 [INFO] [stderr] Compiling pcon v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 12s [INFO] running `Command { std: "docker" "inspect" "fa54a04d03b377f7f0204829254e9a64c03a8f729d6762d495d56c945ac4fa05", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fa54a04d03b377f7f0204829254e9a64c03a8f729d6762d495d56c945ac4fa05", kill_on_drop: false }` [INFO] [stdout] fa54a04d03b377f7f0204829254e9a64c03a8f729d6762d495d56c945ac4fa05 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f009f9eb119317eaaca957870726fb4e4f8757f8b1800f9e4cad70d242c2fdf6 [INFO] running `Command { std: "docker" "start" "-a" "f009f9eb119317eaaca957870726fb4e4f8757f8b1800f9e4cad70d242c2fdf6", kill_on_drop: false }` [INFO] [stderr] Compiling pcon v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 5.05s [INFO] running `Command { std: "docker" "inspect" "f009f9eb119317eaaca957870726fb4e4f8757f8b1800f9e4cad70d242c2fdf6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f009f9eb119317eaaca957870726fb4e4f8757f8b1800f9e4cad70d242c2fdf6", kill_on_drop: false }` [INFO] [stdout] f009f9eb119317eaaca957870726fb4e4f8757f8b1800f9e4cad70d242c2fdf6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] c1697534288c01382ccda3dc2585ee70894e7e2647e5ff850d82af875ed765dc [INFO] running `Command { std: "docker" "start" "-a" "c1697534288c01382ccda3dc2585ee70894e7e2647e5ff850d82af875ed765dc", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/pcon-d1659e03a98ee50e) [INFO] [stdout] running 17 tests [INFO] [stdout] test counter::tests::count_fastq ... ignored [INFO] [stdout] test spectrum::tests::failled_first_local_min ... ok [INFO] [stdout] test spectrum::tests::failled_rarefaction ... ok [INFO] [stdout] test spectrum::tests::first_local_min ... ok [INFO] [stdout] test spectrum::tests::rarefaction ... ok [INFO] [stdout] test counter::tests::deserialize ... ok [INFO] [stdout] test spectrum::tests::test_draw_hist ... ok [INFO] [stdout] test counter::tests::count_fasta ... ok [INFO] [stdout] test solid::tests::set_value ... ok [INFO] [stdout] test solid::tests::presence ... ok [INFO] [stdout] test solid::tests::serialize ... ok [INFO] [stdout] test dump::tests::spectrum ... ok [INFO] [stdout] test dump::tests::csv ... ok [INFO] [stdout] test dump::tests::solid ... ok [INFO] [stdout] test spectrum::tests::from_counter ... ok [INFO] [stdout] test counter::tests::serialize ... ok [INFO] [stdout] test solid::tests::deserialize ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 16 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 0.05s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/pcon-0be576056e00d380) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests pcon [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "c1697534288c01382ccda3dc2585ee70894e7e2647e5ff850d82af875ed765dc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c1697534288c01382ccda3dc2585ee70894e7e2647e5ff850d82af875ed765dc", kill_on_drop: false }` [INFO] [stdout] c1697534288c01382ccda3dc2585ee70894e7e2647e5ff850d82af875ed765dc