[INFO] cloning repository https://github.com/esrice/trio_binning
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/esrice/trio_binning" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fesrice%2Ftrio_binning", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fesrice%2Ftrio_binning'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b253f856c7979414f2a8346270715cb73779ccad
[INFO] testing esrice/trio_binning against try#ecabaf78506b7a4668d42dc20268c086b93f0fad for pr-87041
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fesrice%2Ftrio_binning" "/workspace/builds/worker-2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/esrice/trio_binning on toolchain ecabaf78506b7a4668d42dc20268c086b93f0fad
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/esrice/trio_binning
[INFO] finished tweaking git repo https://github.com/esrice/trio_binning
[INFO] tweaked toml for git repo https://github.com/esrice/trio_binning written to /workspace/builds/worker-2/source/Cargo.toml
[INFO] crate git repo https://github.com/esrice/trio_binning already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/rust-bio/rust-htslib.git`
[INFO] [stderr]     Updating git submodule `https://github.com/samtools/htslib.git`
[INFO] [stderr]     Updating git repository `https://github.com/alexcrichton/bzip2-rs.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ade4fef925cb4bd75f7b5c335ffceef330ac15a1011c94dc093366f989ce6b43
[INFO] running `Command { std: "docker" "start" "-a" "ade4fef925cb4bd75f7b5c335ffceef330ac15a1011c94dc093366f989ce6b43", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ade4fef925cb4bd75f7b5c335ffceef330ac15a1011c94dc093366f989ce6b43", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ade4fef925cb4bd75f7b5c335ffceef330ac15a1011c94dc093366f989ce6b43", kill_on_drop: false }`
[INFO] [stdout] ade4fef925cb4bd75f7b5c335ffceef330ac15a1011c94dc093366f989ce6b43
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a1787881e4b469f2d6bce3a5be944e185af419a16d73de91dff2ab3c2353a091
[INFO] running `Command { std: "docker" "start" "-a" "a1787881e4b469f2d6bce3a5be944e185af419a16d73de91dff2ab3c2353a091", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.71
[INFO] [stderr]    Compiling cc v1.0.18
[INFO] [stderr]    Compiling version_check v0.1.4
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling ucd-util v0.1.1
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling proc-macro2 v0.4.13
[INFO] [stderr]    Compiling utf8-ranges v1.0.0
[INFO] [stderr]    Compiling regex v1.0.2
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling nodrop v0.1.12
[INFO] [stderr]    Compiling crossbeam-utils v0.5.0
[INFO] [stderr]    Compiling termcolor v1.0.1
[INFO] [stderr]    Compiling bitflags v1.0.3
[INFO] [stderr]    Compiling serde v1.0.72
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling strsim v0.7.0
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling rand_core v0.2.1
[INFO] [stderr]    Compiling matches v0.1.8
[INFO] [stderr]    Compiling unicode-normalization v0.1.7
[INFO] [stderr]    Compiling safemem v0.2.0
[INFO] [stderr]    Compiling adler32 v1.0.4
[INFO] [stderr]    Compiling either v1.5.0
[INFO] [stderr]    Compiling bitflags v0.9.1
[INFO] [stderr]    Compiling scoped_threadpool v0.1.9
[INFO] [stderr]    Compiling ieee754 v0.2.2
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling lazy_static v0.2.11
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling owning_ref v0.3.3
[INFO] [stderr]    Compiling proc-macro2 v0.3.5
[INFO] [stderr]    Compiling humantime v1.1.1
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]    Compiling log v0.4.4
[INFO] [stderr]    Compiling unicode-bidi v0.3.4
[INFO] [stderr]    Compiling miniz_oxide v0.3.6
[INFO] [stderr]    Compiling arrayvec v0.4.7
[INFO] [stderr]    Compiling crc32fast v1.2.0
[INFO] [stderr]    Compiling itertools v0.6.5
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling regex-syntax v0.6.2
[INFO] [stderr]    Compiling regex-syntax v0.5.6
[INFO] [stderr]    Compiling lock_api v0.1.3
[INFO] [stderr]    Compiling quote v0.5.2
[INFO] [stderr]    Compiling smallvec v0.6.13
[INFO] [stderr]    Compiling lazy_static v1.1.0
[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling crossbeam-epoch v0.5.2
[INFO] [stderr]    Compiling quote v0.6.8
[INFO] [stderr]    Compiling libloading v0.5.0
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling lzma-sys v0.1.11
[INFO] [stderr]    Compiling bzip2-sys v0.1.6 (https://github.com/alexcrichton/bzip2-rs.git#54aef435)
[INFO] [stderr]    Compiling syn v0.14.9
[INFO] [stderr]    Compiling crossbeam-deque v0.5.2
[INFO] [stderr]    Compiling memchr v2.0.1
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling term_size v0.3.1
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling rand v0.4.3
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]    Compiling rand v0.5.5
[INFO] [stderr]    Compiling slice-deque v0.1.11
[INFO] [stderr]    Compiling flate2 v1.0.14
[INFO] [stderr]    Compiling textwrap v0.10.0
[INFO] [stderr]    Compiling aho-corasick v0.6.6
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]    Compiling clap v2.32.0
[INFO] [stderr]    Compiling buf_redux v0.7.1
[INFO] [stderr]    Compiling idna v0.1.5
[INFO] [stderr]    Compiling url v1.7.1
[INFO] [stderr]    Compiling parking_lot_core v0.2.14
[INFO] [stderr]    Compiling parking_lot v0.6.3
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]    Compiling crossbeam-channel v0.2.4
[INFO] [stderr]    Compiling crossbeam v0.4.1
[INFO] [stderr]    Compiling env_logger v0.5.12
[INFO] [stderr]    Compiling serde_derive v1.0.72
[INFO] [stderr]    Compiling bio-types v0.2.0
[INFO] [stderr]    Compiling seq_io v0.3.0
[INFO] [stderr]    Compiling rust-htslib v0.21.1-alpha.0 (https://github.com/rust-bio/rust-htslib.git?rev=1f9736e#1f9736ef)
[INFO] [stderr]    Compiling trio_binning v0.2.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 23s
[INFO] running `Command { std: "docker" "inspect" "a1787881e4b469f2d6bce3a5be944e185af419a16d73de91dff2ab3c2353a091", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a1787881e4b469f2d6bce3a5be944e185af419a16d73de91dff2ab3c2353a091", kill_on_drop: false }`
[INFO] [stdout] a1787881e4b469f2d6bce3a5be944e185af419a16d73de91dff2ab3c2353a091
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 51e8dd71d4c5fc960652d42413fe7ac49e7bbb6cebe762985862653c4c6c67b1
[INFO] running `Command { std: "docker" "start" "-a" "51e8dd71d4c5fc960652d42413fe7ac49e7bbb6cebe762985862653c4c6c67b1", kill_on_drop: false }`
[INFO] [stderr]    Compiling trio_binning v0.2.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 2.70s
[INFO] running `Command { std: "docker" "inspect" "51e8dd71d4c5fc960652d42413fe7ac49e7bbb6cebe762985862653c4c6c67b1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "51e8dd71d4c5fc960652d42413fe7ac49e7bbb6cebe762985862653c4c6c67b1", kill_on_drop: false }`
[INFO] [stdout] 51e8dd71d4c5fc960652d42413fe7ac49e7bbb6cebe762985862653c4c6c67b1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+ecabaf78506b7a4668d42dc20268c086b93f0fad" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 0ffe85860c2a524c7350d2784295ea5e095d2ab98030a11eea64db7f088c751f
[INFO] running `Command { std: "docker" "start" "-a" "0ffe85860c2a524c7350d2784295ea5e095d2ab98030a11eea64db7f088c751f", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.14s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/trio_binning-a4d2a90bbf8068f4)
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test kmer::tests::canonical ... ok
[INFO] [stdout] test classify::tests::test_count ... ok
[INFO] [stdout] test kmer::tests::revcomp_reversible ... ok
[INFO] [stdout] test kmer::tests::bits_reversible ... ok
[INFO] [stdout] test kmer::tests::too_long_bits_to_kmer - should panic ... ok
[INFO] [stdout] test kmer::tests::invalid_revcomp_base - should panic ... ok
[INFO] [stdout] test kmer::tests::invalid_kmer_base - should panic ... ok
[INFO] [stdout] test kmer::tests::invalid_canonical - should panic ... ok
[INFO] [stdout] test kmer::tests::too_long_kmer_to_bits - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/classify_by_alignment-0ab831004c36f3b8)
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/classify_by_kmers-1d45c42cb884089d)
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests trio_binning
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/classify.rs - classify::open_writer (line 159) ... ignored
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "0ffe85860c2a524c7350d2784295ea5e095d2ab98030a11eea64db7f088c751f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0ffe85860c2a524c7350d2784295ea5e095d2ab98030a11eea64db7f088c751f", kill_on_drop: false }`
[INFO] [stdout] 0ffe85860c2a524c7350d2784295ea5e095d2ab98030a11eea64db7f088c751f