[INFO] fetching crate netcdf 0.6.1...
[INFO] testing netcdf-0.6.1 against master#432e145bd5a974c5b6f4dd9b352891bd7502b69d for pr-87041
[INFO] extracting crate netcdf 0.6.1 into /workspace/builds/worker-5/source
[INFO] validating manifest of crates.io crate netcdf 0.6.1 on toolchain 432e145bd5a974c5b6f4dd9b352891bd7502b69d
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate netcdf 0.6.1
[INFO] finished tweaking crates.io crate netcdf 0.6.1
[INFO] tweaked toml for crates.io crate netcdf 0.6.1 written to /workspace/builds/worker-5/source/Cargo.toml
[INFO] crate crates.io crate netcdf 0.6.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f5873409ec26cec34f5bebebea7529149a9d7a818849e1a49cb961fb4d60ba78
[INFO] running `Command { std: "docker" "start" "-a" "f5873409ec26cec34f5bebebea7529149a9d7a818849e1a49cb961fb4d60ba78", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f5873409ec26cec34f5bebebea7529149a9d7a818849e1a49cb961fb4d60ba78", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f5873409ec26cec34f5bebebea7529149a9d7a818849e1a49cb961fb4d60ba78", kill_on_drop: false }`
[INFO] [stdout] f5873409ec26cec34f5bebebea7529149a9d7a818849e1a49cb961fb4d60ba78
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6b72ce16559a019fbd9904783972f955edf8ecc371a6cc39aa238791f65bca68
[INFO] running `Command { std: "docker" "start" "-a" "6b72ce16559a019fbd9904783972f955edf8ecc371a6cc39aa238791f65bca68", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling memchr v2.3.4
[INFO] [stderr]    Compiling pkg-config v0.3.19
[INFO] [stderr]    Compiling regex-syntax v0.6.22
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling cc v1.0.66
[INFO] [stderr]    Compiling libc v0.2.84
[INFO] [stderr]    Compiling netcdf-sys v0.3.4
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling thread_local v1.1.2
[INFO] [stderr]    Compiling libloading v0.6.7
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling aho-corasick v0.7.15
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling regex v1.4.3
[INFO] [stderr]    Compiling hdf5-sys v0.7.1
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-9654c44812db4c49/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5573f1b637d0 - std::backtrace_rs::backtrace::libunwind::trace::h706b838f5bbd876b
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5
[INFO] [stderr]      1:     0x5573f1b637d0 - std::backtrace_rs::backtrace::trace_unsynchronized::hc15f29ae7822b7b8
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x5573f1b637d0 - std::sys_common::backtrace::_print_fmt::h7c580c971f91926c
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x5573f1b637d0 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h2a772198c4032452
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x5573f1b81d4c - core::fmt::write::h9a6d9c74526a6c1b
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/fmt/mod.rs:1115:17
[INFO] [stderr]      5:     0x5573f1b60be5 - std::io::Write::write_fmt::h00f38d9eb2c32e02
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/io/mod.rs:1663:15
[INFO] [stderr]      6:     0x5573f1b6583b - std::sys_common::backtrace::_print::h5b3c171e6f864ae4
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x5573f1b6583b - std::sys_common::backtrace::print::h93b9e9ed2a98e611
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x5573f1b6583b - std::panicking::default_hook::{{closure}}::hd8da92bb68d520c5
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:208:50
[INFO] [stderr]      9:     0x5573f1b65311 - std::panicking::default_hook::hdbc8b2951c5afbab
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:225:9
[INFO] [stderr]     10:     0x5573f1b65f04 - std::panicking::rust_panic_with_hook::h8a4c841655926f4e
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:622:17
[INFO] [stderr]     11:     0x5573f198fc43 - std::panicking::begin_panic::{{closure}}::h704773e85287551d
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:542:9
[INFO] [stderr]     12:     0x5573f198ad89 - std::sys_common::backtrace::__rust_end_short_backtrace::h1bb2a0effa8ed52b
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x5573f198fb79 - std::panicking::begin_panic::hc18ed230657216d0
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:541:12
[INFO] [stderr]     14:     0x5573f195fd87 - build_script_build::LibrarySearcher::try_locate_hdf5_library::hf3757fdbe60d3ad2
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13
[INFO] [stderr]     15:     0x5573f19615ab - build_script_build::main::hdef9a151fd132e61
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9
[INFO] [stderr]     16:     0x5573f19668bb - core::ops::function::FnOnce::call_once::h93fc0253c17afd94
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/ops/function.rs:227:5
[INFO] [stderr]     17:     0x5573f196d55e - std::sys_common::backtrace::__rust_begin_short_backtrace::hb9d0e1c301c09727
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:125:18
[INFO] [stderr]     18:     0x5573f196bc51 - std::rt::lang_start::{{closure}}::h078ff09c3dceeaca
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/rt.rs:63:18
[INFO] [stderr]     19:     0x5573f1b6640a - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hcbe5785d54a49ce2
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     20:     0x5573f1b6640a - std::panicking::try::do_call::h1c15e7ee8563c29d
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:401:40
[INFO] [stderr]     21:     0x5573f1b6640a - std::panicking::try::hb8b07cef009cb4fc
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:365:19
[INFO] [stderr]     22:     0x5573f1b6640a - std::panic::catch_unwind::h65a8efbe596bcbb1
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panic.rs:434:14
[INFO] [stderr]     23:     0x5573f1b6640a - std::rt::lang_start_internal::{{closure}}::h66ded7ab0f18e9fb
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/rt.rs:45:48
[INFO] [stderr]     24:     0x5573f1b6640a - std::panicking::try::do_call::h29cafa65efb3f3f3
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:401:40
[INFO] [stderr]     25:     0x5573f1b6640a - std::panicking::try::h412fc5378b4dbfc4
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:365:19
[INFO] [stderr]     26:     0x5573f1b6640a - std::panic::catch_unwind::h555def6aac5bf192
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panic.rs:434:14
[INFO] [stderr]     27:     0x5573f1b6640a - std::rt::lang_start_internal::hfff48202d7fee6e3
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/rt.rs:45:20
[INFO] [stderr]     28:     0x5573f196bc20 - std::rt::lang_start::hf5b83d9cb1e58c59
[INFO] [stderr]                                  at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/rt.rs:62:5
[INFO] [stderr]     29:     0x5573f1962a9c - main
[INFO] [stderr]     30:     0x7f36b8e7b0b3 - __libc_start_main
[INFO] [stderr]     31:     0x5573f195af2e - _start
[INFO] [stderr]     32:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "6b72ce16559a019fbd9904783972f955edf8ecc371a6cc39aa238791f65bca68", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6b72ce16559a019fbd9904783972f955edf8ecc371a6cc39aa238791f65bca68", kill_on_drop: false }`
[INFO] [stdout] 6b72ce16559a019fbd9904783972f955edf8ecc371a6cc39aa238791f65bca68