[INFO] fetching crate gchemol 0.0.41...
[INFO] testing gchemol-0.0.41 against master#432e145bd5a974c5b6f4dd9b352891bd7502b69d for pr-87041
[INFO] extracting crate gchemol 0.0.41 into /workspace/builds/worker-0/source
[INFO] validating manifest of crates.io crate gchemol 0.0.41 on toolchain 432e145bd5a974c5b6f4dd9b352891bd7502b69d
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gchemol 0.0.41
[INFO] finished tweaking crates.io crate gchemol 0.0.41
[INFO] tweaked toml for crates.io crate gchemol 0.0.41 written to /workspace/builds/worker-0/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6b3b9ddd4208a8414785f76569b729650c4eed7e7b507edf8fbdf91a5bdd4ed1
[INFO] running `Command { std: "docker" "start" "-a" "6b3b9ddd4208a8414785f76569b729650c4eed7e7b507edf8fbdf91a5bdd4ed1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6b3b9ddd4208a8414785f76569b729650c4eed7e7b507edf8fbdf91a5bdd4ed1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6b3b9ddd4208a8414785f76569b729650c4eed7e7b507edf8fbdf91a5bdd4ed1", kill_on_drop: false }`
[INFO] [stdout] 6b3b9ddd4208a8414785f76569b729650c4eed7e7b507edf8fbdf91a5bdd4ed1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 73a75536dfe4161c9e2d7415b1158c84b4c715858556ce87bacd5e86d14926db
[INFO] running `Command { std: "docker" "start" "-a" "73a75536dfe4161c9e2d7415b1158c84b4c715858556ce87bacd5e86d14926db", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.98
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling once_cell v1.8.0
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling ucd-trie v0.1.3
[INFO] [stderr]    Compiling hashbrown v0.11.2
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[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling deunicode v0.4.3
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling humansize v1.1.1
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling percent-encoding v2.1.0
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling nom v5.1.2
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[INFO] [stderr]    Compiling bstr v0.2.16
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[INFO] [stderr]    Compiling chrono-tz v0.5.3
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[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling shared_child v0.3.5
[INFO] [stderr]    Compiling os_pipe v0.9.2
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling env_logger v0.7.1
[INFO] [stderr]    Compiling env_logger v0.8.4
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[INFO] [stderr]    Compiling duct v0.13.5
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling pretty_env_logger v0.4.0
[INFO] [stderr]    Compiling rand v0.7.3
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[INFO] [stderr]    Compiling globwalk v0.8.1
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling pest_generator v2.1.3
[INFO] [stderr]    Compiling rand_distr v0.2.2
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling serde_derive v1.0.126
[INFO] [stderr]    Compiling structopt-derive v0.4.15
[INFO] [stderr]    Compiling pest_derive v2.1.0
[INFO] [stderr]    Compiling structopt v0.3.22
[INFO] [stderr]    Compiling serde v1.0.126
[INFO] [stderr]    Compiling serde_json v1.0.64
[INFO] [stderr]    Compiling toml v0.5.8
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling envy v0.4.2
[INFO] [stderr]    Compiling bimap v0.4.0
[INFO] [stderr]    Compiling alga v0.9.3
[INFO] [stderr]    Compiling tera v1.12.1
[INFO] [stderr]    Compiling handlebars v3.5.5
[INFO] [stderr]    Compiling gchemol-gut v0.1.5
[INFO] [stderr]    Compiling nalgebra v0.20.0
[INFO] [stderr]    Compiling gchemol-parser v0.2.1
[INFO] [stderr]    Compiling gchemol-graph v0.1.1
[INFO] [stderr]    Compiling vecfx v0.1.2
[INFO] [stderr]    Compiling octree v0.1.0
[INFO] [stderr]    Compiling gchemol-lattice v0.1.0
[INFO] [stderr]    Compiling gchemol-geometry v0.0.39
[INFO] [stderr]    Compiling gchemol-neighbors v0.1.0
[INFO] [stderr]    Compiling gchemol-core v0.0.42
[INFO] [stderr]    Compiling gchemol-readwrite v0.0.41
[INFO] [stderr]    Compiling gchemol v0.0.41 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 01s
[INFO] running `Command { std: "docker" "inspect" "73a75536dfe4161c9e2d7415b1158c84b4c715858556ce87bacd5e86d14926db", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "73a75536dfe4161c9e2d7415b1158c84b4c715858556ce87bacd5e86d14926db", kill_on_drop: false }`
[INFO] [stdout] 73a75536dfe4161c9e2d7415b1158c84b4c715858556ce87bacd5e86d14926db
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] cc855ea4a33a33d5fb537011d27866515f38a4773a9782054e76528fb483565d
[INFO] running `Command { std: "docker" "start" "-a" "cc855ea4a33a33d5fb537011d27866515f38a4773a9782054e76528fb483565d", kill_on_drop: false }`
[INFO] [stderr]    Compiling gchemol v0.0.41 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `gchemol::prelude::*`
[INFO] [stdout]  --> tests/molecule.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use gchemol::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `mol`
[INFO] [stdout]   --> tests/io.rs:44:9
[INFO] [stdout]    |
[INFO] [stdout] 44 |     for mol in gchemol::io::read(&f).expect("read mol2") {
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_mol`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 5.94s
[INFO] running `Command { std: "docker" "inspect" "cc855ea4a33a33d5fb537011d27866515f38a4773a9782054e76528fb483565d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cc855ea4a33a33d5fb537011d27866515f38a4773a9782054e76528fb483565d", kill_on_drop: false }`
[INFO] [stdout] cc855ea4a33a33d5fb537011d27866515f38a4773a9782054e76528fb483565d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] f8b7fccf090a3c72c17ad930859d3b10bd617ee68cdc94bc0547388885c1b461
[INFO] running `Command { std: "docker" "start" "-a" "f8b7fccf090a3c72c17ad930859d3b10bd617ee68cdc94bc0547388885c1b461", kill_on_drop: false }`
[INFO] [stderr] warning: unused variable: `mol`
[INFO] [stderr]   --> tests/io.rs:44:9
[INFO] [stderr]    |
[INFO] [stderr] 44 |     for mol in gchemol::io::read(&f).expect("read mol2") {
[INFO] [stderr]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_mol`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: 1 warning emitted
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `gchemol::prelude::*`
[INFO] [stderr]  --> tests/molecule.rs:3:5
[INFO] [stderr]   |
[INFO] [stderr] 3 | use gchemol::prelude::*;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: 1 warning emitted
[INFO] [stderr] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.10s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/gchemol-d565527705680c02)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/crystal.rs (/opt/rustwide/target/debug/deps/crystal-45c9e96c4acf2064)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test test_crystal ... ok
[INFO] [stdout] test test_supercell ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/io.rs (/opt/rustwide/target/debug/deps/io-dffd4195d20f5617)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test io_from_file_to_file ... ok
[INFO] [stdout] test read_write_molecules ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/molecule.rs (/opt/rustwide/target/debug/deps/molecule-331204bc2ea89d1c)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test test_atom_data ... ok
[INFO] [stdout] test test_new_atom ... ok
[INFO] [stdout] test test_molecule_properties ... ok
[INFO] [stdout] test test_new_molecule ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests gchemol
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "f8b7fccf090a3c72c17ad930859d3b10bd617ee68cdc94bc0547388885c1b461", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f8b7fccf090a3c72c17ad930859d3b10bd617ee68cdc94bc0547388885c1b461", kill_on_drop: false }`
[INFO] [stdout] f8b7fccf090a3c72c17ad930859d3b10bd617ee68cdc94bc0547388885c1b461