[INFO] cloning repository https://github.com/zaeleus/noodles [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9d1ec4a8d2ae91023d015285303260438430a014 [INFO] testing zaeleus/noodles against master#432e145bd5a974c5b6f4dd9b352891bd7502b69d for pr-87041 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles" "/workspace/builds/worker-3/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/zaeleus/noodles on toolchain 432e145bd5a974c5b6f4dd9b352891bd7502b69d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/zaeleus/noodles [INFO] finished tweaking git repo https://github.com/zaeleus/noodles [INFO] tweaked toml for git repo https://github.com/zaeleus/noodles written to /workspace/builds/worker-3/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 1a521d4cc3fcf88bca9e55ab0c30fc35472b27446b2c804534625428bee3abcd [INFO] running `Command { std: "docker" "start" "-a" "1a521d4cc3fcf88bca9e55ab0c30fc35472b27446b2c804534625428bee3abcd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1a521d4cc3fcf88bca9e55ab0c30fc35472b27446b2c804534625428bee3abcd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1a521d4cc3fcf88bca9e55ab0c30fc35472b27446b2c804534625428bee3abcd", kill_on_drop: false }` [INFO] [stdout] 1a521d4cc3fcf88bca9e55ab0c30fc35472b27446b2c804534625428bee3abcd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 86ea82ecd1f766dc84f075af71e23a1b3c4759bd8b53ab58e37b46b098219a9e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "86ea82ecd1f766dc84f075af71e23a1b3c4759bd8b53ab58e37b46b098219a9e", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.98 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling cc v1.0.69 [INFO] [stderr] Compiling hashbrown v0.11.2 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling typenum v1.13.0 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling lexical-core v0.7.6 [INFO] [stderr] Compiling static_assertions v1.1.0 [INFO] [stderr] Compiling arrayvec v0.5.2 [INFO] [stderr] Compiling tap v1.0.1 [INFO] [stderr] Compiling opaque-debug v0.3.0 [INFO] [stderr] Compiling noodles v0.1.0 (/opt/rustwide/workdir/noodles) [INFO] [stderr] Compiling noodles-fastq v0.1.0 (/opt/rustwide/workdir/noodles-fastq) [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Compiling noodles-gff v0.1.0 (/opt/rustwide/workdir/noodles-gff) [INFO] [stderr] Compiling bitvec v0.19.5 [INFO] [stderr] Compiling generic-array v0.14.4 [INFO] [stderr] Compiling nom v6.2.1 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling flate2 v1.0.20 [INFO] [stderr] Compiling noodles-bgzf v0.1.0 (/opt/rustwide/workdir/noodles-bgzf) [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling noodles-sam v0.1.0 (/opt/rustwide/workdir/noodles-sam) [INFO] [stderr] Compiling noodles-csi v0.1.0 (/opt/rustwide/workdir/noodles-csi) [INFO] [stderr] Compiling digest v0.9.0 [INFO] [stderr] Compiling block-buffer v0.9.0 [INFO] [stderr] Compiling md-5 v0.9.1 [INFO] [stderr] Compiling bzip2 v0.4.3 [INFO] [stderr] Compiling noodles-tabix v0.1.0 (/opt/rustwide/workdir/noodles-tabix) [INFO] [stderr] Compiling noodles-core v0.1.0 (/opt/rustwide/workdir/noodles-core) [INFO] [stderr] Compiling noodles-bam v0.1.0 (/opt/rustwide/workdir/noodles-bam) [INFO] [stderr] Compiling noodles-fasta v0.1.0 (/opt/rustwide/workdir/noodles-fasta) [INFO] [stderr] Compiling noodles-cram v0.1.0 (/opt/rustwide/workdir/noodles-cram) [INFO] [stderr] Compiling noodles-vcf v0.1.0 (/opt/rustwide/workdir/noodles-vcf) [INFO] [stderr] Compiling noodles-bcf v0.1.0 (/opt/rustwide/workdir/noodles-bcf) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 19.72s [INFO] running `Command { std: "docker" "inspect" "86ea82ecd1f766dc84f075af71e23a1b3c4759bd8b53ab58e37b46b098219a9e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "86ea82ecd1f766dc84f075af71e23a1b3c4759bd8b53ab58e37b46b098219a9e", kill_on_drop: false }` [INFO] [stdout] 86ea82ecd1f766dc84f075af71e23a1b3c4759bd8b53ab58e37b46b098219a9e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7093a85419556bf38f4c4ee2ba966fd22a643adc2162247c4f203e8a57b41c66 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "7093a85419556bf38f4c4ee2ba966fd22a643adc2162247c4f203e8a57b41c66", kill_on_drop: false }` [INFO] [stderr] Compiling noodles-fastq v0.1.0 (/opt/rustwide/workdir/noodles-fastq) [INFO] [stderr] Compiling noodles v0.1.0 (/opt/rustwide/workdir/noodles) [INFO] [stderr] Compiling noodles-gff v0.1.0 (/opt/rustwide/workdir/noodles-gff) [INFO] [stderr] Compiling noodles-bgzf v0.1.0 (/opt/rustwide/workdir/noodles-bgzf) [INFO] [stderr] Compiling noodles-csi v0.1.0 (/opt/rustwide/workdir/noodles-csi) [INFO] [stderr] Compiling noodles-sam v0.1.0 (/opt/rustwide/workdir/noodles-sam) [INFO] [stderr] Compiling noodles-core v0.1.0 (/opt/rustwide/workdir/noodles-core) [INFO] [stderr] Compiling noodles-tabix v0.1.0 (/opt/rustwide/workdir/noodles-tabix) [INFO] [stderr] Compiling noodles-vcf v0.1.0 (/opt/rustwide/workdir/noodles-vcf) [INFO] [stderr] Compiling noodles-fasta v0.1.0 (/opt/rustwide/workdir/noodles-fasta) [INFO] [stderr] Compiling noodles-bam v0.1.0 (/opt/rustwide/workdir/noodles-bam) [INFO] [stderr] Compiling noodles-bcf v0.1.0 (/opt/rustwide/workdir/noodles-bcf) [INFO] [stderr] Compiling noodles-cram v0.1.0 (/opt/rustwide/workdir/noodles-cram) [INFO] [stderr] error: could not compile `noodles-sam` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `rustc --crate-name noodles_sam --edition=2018 noodles-sam/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi --emit=dep-info,link -C embed-bitcode=no -C debuginfo=2 --test -C metadata=add7624ee7ff59c1 -C extra-filename=-add7624ee7ff59c1 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern bitflags=/opt/rustwide/target/debug/deps/libbitflags-603a79344a96ee73.rlib --extern indexmap=/opt/rustwide/target/debug/deps/libindexmap-ad802e4cbbe71e86.rlib --extern noodles_bgzf=/opt/rustwide/target/debug/deps/libnoodles_bgzf-76e117a5a060e426.rlib --cap-lints=forbid` (signal: 9, SIGKILL: kill) [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "7093a85419556bf38f4c4ee2ba966fd22a643adc2162247c4f203e8a57b41c66", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7093a85419556bf38f4c4ee2ba966fd22a643adc2162247c4f203e8a57b41c66", kill_on_drop: false }` [INFO] [stdout] 7093a85419556bf38f4c4ee2ba966fd22a643adc2162247c4f203e8a57b41c66