[INFO] cloning repository https://github.com/yitapi/analyze_amplicons [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/yitapi/analyze_amplicons" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyitapi%2Fanalyze_amplicons", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyitapi%2Fanalyze_amplicons'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] be4f0e4f49256237f3026919a2742eb16e73dd75 [INFO] testing yitapi/analyze_amplicons against master#432e145bd5a974c5b6f4dd9b352891bd7502b69d for pr-87041 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyitapi%2Fanalyze_amplicons" "/workspace/builds/worker-0/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/yitapi/analyze_amplicons on toolchain 432e145bd5a974c5b6f4dd9b352891bd7502b69d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/yitapi/analyze_amplicons [INFO] finished tweaking git repo https://github.com/yitapi/analyze_amplicons [INFO] tweaked toml for git repo https://github.com/yitapi/analyze_amplicons written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate git repo https://github.com/yitapi/analyze_amplicons already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9b2972fa37487bfe5f2ec711eaeb09e0143dabad4fb23ba2057343c30bc2a426 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "9b2972fa37487bfe5f2ec711eaeb09e0143dabad4fb23ba2057343c30bc2a426", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9b2972fa37487bfe5f2ec711eaeb09e0143dabad4fb23ba2057343c30bc2a426", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9b2972fa37487bfe5f2ec711eaeb09e0143dabad4fb23ba2057343c30bc2a426", kill_on_drop: false }` [INFO] [stdout] 9b2972fa37487bfe5f2ec711eaeb09e0143dabad4fb23ba2057343c30bc2a426 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5180b3073288cc8abd565a2efcb9cf05767e09b8b687b7d45a04f74805f3d20b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5180b3073288cc8abd565a2efcb9cf05767e09b8b687b7d45a04f74805f3d20b", kill_on_drop: false }` [INFO] [stderr] Compiling byteorder v1.0.0 [INFO] [stderr] Compiling bit-vec v0.4.3 [INFO] [stderr] Compiling either v1.0.2 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling itertools-num v0.1.1 [INFO] [stderr] Compiling num-bigint v0.1.35 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling ordered-float v0.3.0 [INFO] [stderr] Compiling itertools v0.5.9 [INFO] [stderr] Compiling bit-set v0.4.0 [INFO] [stderr] Compiling csv v0.15.0 [INFO] [stderr] Compiling num-rational v0.1.35 [INFO] [stderr] Compiling num v0.1.36 [INFO] [stderr] Compiling nalgebra v0.10.1 [INFO] [stderr] Compiling bio v0.10.0 (https://github.com/yitapi/rust-bio#24e457b1) [INFO] [stderr] Compiling analyze_amplicon v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/main.rs:92:22 [INFO] [stdout] | [INFO] [stdout] 92 | let mut output = try!(File::create(output_file)); [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/main.rs:137:9 [INFO] [stdout] | [INFO] [stdout] 137 | try!(write!(output, "{} {} {}\n", pac, hamming(&pac, &wt_pac), counts)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/main.rs:86:101 [INFO] [stdout] | [INFO] [stdout] 86 | fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see issue #80165 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:350:5 [INFO] [stdout] | [INFO] [stdout] 350 | data_stat(&results, &args[4]); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 21.37s [INFO] running `Command { std: "docker" "inspect" "5180b3073288cc8abd565a2efcb9cf05767e09b8b687b7d45a04f74805f3d20b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5180b3073288cc8abd565a2efcb9cf05767e09b8b687b7d45a04f74805f3d20b", kill_on_drop: false }` [INFO] [stdout] 5180b3073288cc8abd565a2efcb9cf05767e09b8b687b7d45a04f74805f3d20b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 187c64a4fc796e5dcd98243ee6a2bddaee3190e974000c7214a8857f0eeb737e [INFO] running `Command { std: "docker" "start" "-a" "187c64a4fc796e5dcd98243ee6a2bddaee3190e974000c7214a8857f0eeb737e", kill_on_drop: false }` [INFO] [stderr] Compiling analyze_amplicon v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/main.rs:92:22 [INFO] [stdout] | [INFO] [stdout] 92 | let mut output = try!(File::create(output_file)); [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stdout] --> src/main.rs:137:9 [INFO] [stdout] | [INFO] [stdout] 137 | try!(write!(output, "{} {} {}\n", pac, hamming(&pac, &wt_pac), counts)); [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/main.rs:86:101 [INFO] [stdout] | [INFO] [stdout] 86 | fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see issue #80165 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:350:5 [INFO] [stdout] | [INFO] [stdout] 350 | data_stat(&results, &args[4]); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.19s [INFO] running `Command { std: "docker" "inspect" "187c64a4fc796e5dcd98243ee6a2bddaee3190e974000c7214a8857f0eeb737e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "187c64a4fc796e5dcd98243ee6a2bddaee3190e974000c7214a8857f0eeb737e", kill_on_drop: false }` [INFO] [stdout] 187c64a4fc796e5dcd98243ee6a2bddaee3190e974000c7214a8857f0eeb737e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 2976fae7ac9402e9b02b76a245a0109746c2c1f03c7d516d54d6d452262be435 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "2976fae7ac9402e9b02b76a245a0109746c2c1f03c7d516d54d6d452262be435", kill_on_drop: false }` [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/main.rs:92:22 [INFO] [stderr] | [INFO] [stderr] 92 | let mut output = try!(File::create(output_file)); [INFO] [stderr] | ^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `try`: use the `?` operator instead [INFO] [stderr] --> src/main.rs:137:9 [INFO] [stderr] | [INFO] [stderr] 137 | try!(write!(output, "{} {} {}\n", pac, hamming(&pac, &wt_pac), counts)); [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:86:101 [INFO] [stderr] | [INFO] [stderr] 86 | fn data_stat(results: &HashMap)>, output_file: &str) -> Result> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see issue #80165 [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> src/main.rs:350:5 [INFO] [stderr] | [INFO] [stderr] 350 | data_stat(&results, &args[4]); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: 4 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.05s [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/analyze_amplicon-8fb3a8dad08edf23) [INFO] running `Command { std: "docker" "inspect" "2976fae7ac9402e9b02b76a245a0109746c2c1f03c7d516d54d6d452262be435", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2976fae7ac9402e9b02b76a245a0109746c2c1f03c7d516d54d6d452262be435", kill_on_drop: false }` [INFO] [stdout] 2976fae7ac9402e9b02b76a245a0109746c2c1f03c7d516d54d6d452262be435