[INFO] cloning repository https://github.com/wheaton5/het_snp_kmers [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/wheaton5/het_snp_kmers" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fhet_snp_kmers", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fhet_snp_kmers'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 81bddfa5537686072c13ab3780d45ca0c99b9b0a [INFO] testing wheaton5/het_snp_kmers against master#432e145bd5a974c5b6f4dd9b352891bd7502b69d for pr-87041 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fhet_snp_kmers" "/workspace/builds/worker-11/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-11/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/wheaton5/het_snp_kmers on toolchain 432e145bd5a974c5b6f4dd9b352891bd7502b69d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/wheaton5/het_snp_kmers [INFO] finished tweaking git repo https://github.com/wheaton5/het_snp_kmers [INFO] tweaked toml for git repo https://github.com/wheaton5/het_snp_kmers written to /workspace/builds/worker-11/source/Cargo.toml [INFO] crate git repo https://github.com/wheaton5/het_snp_kmers already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7e18d7a96311e2b0dfa6ce1b822801934a315d9b2db1be03efdd9ed0b94a2be9 [INFO] running `Command { std: "docker" "start" "-a" "7e18d7a96311e2b0dfa6ce1b822801934a315d9b2db1be03efdd9ed0b94a2be9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7e18d7a96311e2b0dfa6ce1b822801934a315d9b2db1be03efdd9ed0b94a2be9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7e18d7a96311e2b0dfa6ce1b822801934a315d9b2db1be03efdd9ed0b94a2be9", kill_on_drop: false }` [INFO] [stdout] 7e18d7a96311e2b0dfa6ce1b822801934a315d9b2db1be03efdd9ed0b94a2be9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3fc612b9014c823d15464c2379dc55775eb9fbc6e93aede17672842c012367fe [INFO] running `Command { std: "docker" "start" "-a" "3fc612b9014c823d15464c2379dc55775eb9fbc6e93aede17672842c012367fe", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.62 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.64 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling serde_derive v1.0.124 [INFO] [stderr] Compiling serde v1.0.124 [INFO] [stderr] Compiling getrandom v0.1.12 [INFO] [stderr] Compiling cfg-if v0.1.9 [INFO] [stderr] Compiling rand_core v0.6.2 [INFO] [stderr] Compiling itoa v0.4.7 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling byteorder v1.2.7 [INFO] [stderr] Compiling ansi_term v0.9.0 [INFO] [stderr] Compiling bitflags v0.9.1 [INFO] [stderr] Compiling strsim v0.6.0 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Compiling fnv v1.0.6 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling crossbeam-utils v0.8.3 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-bigint v0.3.2 [INFO] [stderr] Compiling num-iter v0.1.42 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling num-rational v0.3.2 [INFO] [stderr] Compiling c2-chacha v0.2.2 [INFO] [stderr] Compiling textwrap v0.9.0 [INFO] [stderr] Compiling itertools v0.10.0 [INFO] [stderr] Compiling hashbrown v0.1.8 [INFO] [stderr] Compiling wyhash v0.5.0 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling crossbeam-epoch v0.9.3 [INFO] [stderr] Compiling crossbeam-channel v0.5.0 [INFO] [stderr] Compiling num-complex v0.3.1 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling clap v2.27.1 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rand_chacha v0.2.1 [INFO] [stderr] Compiling rand v0.7.2 [INFO] [stderr] Compiling num v0.3.1 [INFO] [stderr] Compiling boomphf v0.5.9 [INFO] [stderr] Compiling serde_json v1.0.64 [INFO] [stderr] Compiling debruijn v0.3.2 (https://github.com/10XGenomics/rust-debruijn.git#f6e9188a) [INFO] [stderr] Compiling het_snp_kmers v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `debruijn::kmer::*` [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use debruijn::kmer::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::io::Write` [INFO] [stdout] --> src/main.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | use std::io::Write; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::error::Error` [INFO] [stdout] --> src/main.rs:18:5 [INFO] [stdout] | [INFO] [stdout] 18 | use std::error::Error; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::cmp::min` [INFO] [stdout] --> src/main.rs:29:5 [INFO] [stdout] | [INFO] [stdout] 29 | use std::cmp::min; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn` [INFO] [stdout] --> src/main.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use debruijn::*; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `het_kmers` [INFO] [stdout] --> src/main.rs:33:10 [INFO] [stdout] | [INFO] [stdout] 33 | let (het_kmers, het_kmer_pairs) = load_kmers(¶ms); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_het_kmers` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `het_kmer_pairs` [INFO] [stdout] --> src/main.rs:33:21 [INFO] [stdout] | [INFO] [stdout] 33 | let (het_kmers, het_kmer_pairs) = load_kmers(¶ms); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_het_kmer_pairs` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `kmer_u64` [INFO] [stdout] --> src/main.rs:109:25 [INFO] [stdout] | [INFO] [stdout] 109 | let kmer_u64 = twobit(&kmer); [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_kmer_u64` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 8 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 46.30s [INFO] running `Command { std: "docker" "inspect" "3fc612b9014c823d15464c2379dc55775eb9fbc6e93aede17672842c012367fe", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3fc612b9014c823d15464c2379dc55775eb9fbc6e93aede17672842c012367fe", kill_on_drop: false }` [INFO] [stdout] 3fc612b9014c823d15464c2379dc55775eb9fbc6e93aede17672842c012367fe [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 58b112c6c938f8b7c5e3f8ff05ac7ab0d8d9d28094340a2a37bf0caf37d43a1b [INFO] running `Command { std: "docker" "start" "-a" "58b112c6c938f8b7c5e3f8ff05ac7ab0d8d9d28094340a2a37bf0caf37d43a1b", kill_on_drop: false }` [INFO] [stderr] Compiling het_snp_kmers v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `debruijn::kmer::*` [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use debruijn::kmer::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::io::Write` [INFO] [stdout] --> src/main.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | use std::io::Write; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::error::Error` [INFO] [stdout] --> src/main.rs:18:5 [INFO] [stdout] | [INFO] [stdout] 18 | use std::error::Error; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::cmp::min` [INFO] [stdout] --> src/main.rs:29:5 [INFO] [stdout] | [INFO] [stdout] 29 | use std::cmp::min; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debruijn` [INFO] [stdout] --> src/main.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use debruijn::*; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `het_kmers` [INFO] [stdout] --> src/main.rs:33:10 [INFO] [stdout] | [INFO] [stdout] 33 | let (het_kmers, het_kmer_pairs) = load_kmers(¶ms); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_het_kmers` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `het_kmer_pairs` [INFO] [stdout] --> src/main.rs:33:21 [INFO] [stdout] | [INFO] [stdout] 33 | let (het_kmers, het_kmer_pairs) = load_kmers(¶ms); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_het_kmer_pairs` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `kmer_u64` [INFO] [stdout] --> src/main.rs:109:25 [INFO] [stdout] | [INFO] [stdout] 109 | let kmer_u64 = twobit(&kmer); [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_kmer_u64` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 8 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.95s [INFO] running `Command { std: "docker" "inspect" "58b112c6c938f8b7c5e3f8ff05ac7ab0d8d9d28094340a2a37bf0caf37d43a1b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "58b112c6c938f8b7c5e3f8ff05ac7ab0d8d9d28094340a2a37bf0caf37d43a1b", kill_on_drop: false }` [INFO] [stdout] 58b112c6c938f8b7c5e3f8ff05ac7ab0d8d9d28094340a2a37bf0caf37d43a1b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 17a27dcbd5a930147fe4e54ff8584ecc428d17358f60bb9a6d7167f6f3b5e016 [INFO] running `Command { std: "docker" "start" "-a" "17a27dcbd5a930147fe4e54ff8584ecc428d17358f60bb9a6d7167f6f3b5e016", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `debruijn::kmer::*` [INFO] [stderr] --> src/main.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | use debruijn::kmer::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::io::Write` [INFO] [stderr] --> src/main.rs:17:5 [INFO] [stderr] | [INFO] [stderr] 17 | use std::io::Write; [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::error::Error` [INFO] [stderr] --> src/main.rs:18:5 [INFO] [stderr] | [INFO] [stderr] 18 | use std::error::Error; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::cmp::min` [INFO] [stderr] --> src/main.rs:29:5 [INFO] [stderr] | [INFO] [stderr] 29 | use std::cmp::min; [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `debruijn` [INFO] [stderr] --> src/main.rs:7:5 [INFO] [stderr] | [INFO] [stderr] 7 | use debruijn::*; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `het_kmers` [INFO] [stderr] --> src/main.rs:33:10 [INFO] [stderr] | [INFO] [stderr] 33 | let (het_kmers, het_kmer_pairs) = load_kmers(¶ms); [INFO] [stderr] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_het_kmers` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `het_kmer_pairs` [INFO] [stderr] --> src/main.rs:33:21 [INFO] [stderr] | [INFO] [stderr] 33 | let (het_kmers, het_kmer_pairs) = load_kmers(¶ms); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_het_kmer_pairs` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `kmer_u64` [INFO] [stderr] --> src/main.rs:109:25 [INFO] [stderr] | [INFO] [stderr] 109 | let kmer_u64 = twobit(&kmer); [INFO] [stderr] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_kmer_u64` [INFO] [stderr] [INFO] [stderr] warning: 8 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/het_snp_kmers-695fc3aab7600101) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "17a27dcbd5a930147fe4e54ff8584ecc428d17358f60bb9a6d7167f6f3b5e016", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "17a27dcbd5a930147fe4e54ff8584ecc428d17358f60bb9a6d7167f6f3b5e016", kill_on_drop: false }` [INFO] [stdout] 17a27dcbd5a930147fe4e54ff8584ecc428d17358f60bb9a6d7167f6f3b5e016