[INFO] cloning repository https://github.com/urbanslug/wfilter
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/urbanslug/wfilter" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Furbanslug%2Fwfilter", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Furbanslug%2Fwfilter'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8365867c485c566fd29d5f34700805de4f176c08
[INFO] testing urbanslug/wfilter against master#432e145bd5a974c5b6f4dd9b352891bd7502b69d for pr-87041
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Furbanslug%2Fwfilter" "/workspace/builds/worker-14/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-14/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/urbanslug/wfilter on toolchain 432e145bd5a974c5b6f4dd9b352891bd7502b69d
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/urbanslug/wfilter
[INFO] finished tweaking git repo https://github.com/urbanslug/wfilter
[INFO] tweaked toml for git repo https://github.com/urbanslug/wfilter written to /workspace/builds/worker-14/source/Cargo.toml
[INFO] crate git repo https://github.com/urbanslug/wfilter already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 02a5e5cce336f54e4eebf0c3f98622d9c98ba0d556760e58be1c5da9e8079a05
[INFO] running `Command { std: "docker" "start" "-a" "02a5e5cce336f54e4eebf0c3f98622d9c98ba0d556760e58be1c5da9e8079a05", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "02a5e5cce336f54e4eebf0c3f98622d9c98ba0d556760e58be1c5da9e8079a05", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "02a5e5cce336f54e4eebf0c3f98622d9c98ba0d556760e58be1c5da9e8079a05", kill_on_drop: false }`
[INFO] [stdout] 02a5e5cce336f54e4eebf0c3f98622d9c98ba0d556760e58be1c5da9e8079a05
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5887e16d6c3b167defa54dcebf88cb679b35d078a4d681f0385938507d7c7f1a
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "5887e16d6c3b167defa54dcebf88cb679b35d078a4d681f0385938507d7c7f1a", kill_on_drop: false }`
[INFO] [stderr]    Compiling memchr v2.4.0
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.27
[INFO] [stderr]    Compiling crossbeam-utils v0.8.5
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling bindgen v0.53.3
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling crossbeam-queue v0.3.2
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling syn v1.0.73
[INFO] [stderr]    Compiling serde v1.0.126
[INFO] [stderr]    Compiling safemem v0.3.3
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling coitrees v0.2.1
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling which v3.1.1
[INFO] [stderr]    Compiling terminal_size v0.1.17
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling console v0.14.1
[INFO] [stderr]    Compiling memoffset v0.6.4
[INFO] [stderr]    Compiling clang-sys v0.29.3
[INFO] [stderr]    Compiling crossbeam-channel v0.5.1
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling buf_redux v0.8.4
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling crossbeam-deque v0.8.0
[INFO] [stderr]    Compiling crossbeam v0.8.1
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling env_logger v0.7.1
[INFO] [stderr]    Compiling indicatif v0.16.2
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]    Compiling serde_derive v1.0.126
[INFO] [stderr]    Compiling libwfa v0.1.2
[INFO] [stderr]    Compiling seq_io v0.3.1
[INFO] [stderr]    Compiling wfilter v0.0.1-alpha (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `coitrees`
[INFO] [stdout]  --> src/main.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use coitrees;
[INFO] [stdout]   |     ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Penalties`
[INFO] [stdout]  --> src/wflambda/wfa.rs:7:36
[INFO] [stdout]   |
[INFO] [stdout] 7 | use super::super::types::{CliArgs, Penalties};
[INFO] [stdout]   |                                    ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `from_str`
[INFO] [stdout]   --> src/fasta.rs:26:12
[INFO] [stdout]    |
[INFO] [stdout] 26 |     pub fn from_str(data: &str) -> FastaFile {
[INFO] [stdout]    |            ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 55s
[INFO] running `Command { std: "docker" "inspect" "5887e16d6c3b167defa54dcebf88cb679b35d078a4d681f0385938507d7c7f1a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5887e16d6c3b167defa54dcebf88cb679b35d078a4d681f0385938507d7c7f1a", kill_on_drop: false }`
[INFO] [stdout] 5887e16d6c3b167defa54dcebf88cb679b35d078a4d681f0385938507d7c7f1a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a65310190c1dd379f94a8a198e7b65eb8c750f868aaa4537255a2a9696c4e77d
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "a65310190c1dd379f94a8a198e7b65eb8c750f868aaa4537255a2a9696c4e77d", kill_on_drop: false }`
[INFO] [stderr]    Compiling wfilter v0.0.1-alpha (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `coitrees`
[INFO] [stdout]  --> src/main.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use coitrees;
[INFO] [stdout]   |     ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 5.00s
[INFO] running `Command { std: "docker" "inspect" "a65310190c1dd379f94a8a198e7b65eb8c750f868aaa4537255a2a9696c4e77d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a65310190c1dd379f94a8a198e7b65eb8c750f868aaa4537255a2a9696c4e77d", kill_on_drop: false }`
[INFO] [stdout] a65310190c1dd379f94a8a198e7b65eb8c750f868aaa4537255a2a9696c4e77d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 88544289b09a492709ce8291c5a094eaec4754eb4776643ffa0b31867d5baa66
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "88544289b09a492709ce8291c5a094eaec4754eb4776643ffa0b31867d5baa66", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `coitrees`
[INFO] [stderr]  --> src/main.rs:1:5
[INFO] [stderr]   |
[INFO] [stderr] 1 | use coitrees;
[INFO] [stderr]   |     ^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: 1 warning emitted
[INFO] [stderr] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.09s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/wfilter-143d936009ac89e9)
[INFO] [stdout] 
[INFO] [stdout] running 21 tests
[INFO] [stdout] test index::tests::test_compute_match_intervals ... ignored
[INFO] [stdout] test paf::tests::test_parse_alignment ... ok
[INFO] [stdout] test wflambda::wfa::tests::align::test_c_example ... ok
[INFO] [stdout] test wflambda::wfa::tests::align::test_same_sequence ... ok
[INFO] [stdout] test index::tests::test_index_paf ... ok
[INFO] [stdout] test wflambda::wfa::tests::align::test_paper_test_case ... ok
[INFO] [stdout] test wflambda::wfa::tests::backtrace::test_paper_example ... ok
[INFO] [stdout] test fasta::tests::test_with_newlines ... ok
[INFO] [stdout] test wflambda::wflambda::tests::test_wfilter ... ok
[INFO] [stdout] test wflambda::wfa::tests::utils::test_run_length_encode ... ok
[INFO] [stdout] test wflambda::wfa::tests::backtrace::test_same_sequence ... ok
[INFO] [stdout] test wflambda::wfa::tests::backtrace::test_snp ... ok
[INFO] [stdout] test fasta::tests::test_without_newlines ... ok
[INFO] [stdout] test wflambda::wfa::tests::align::test_same_length ... ok
[INFO] [stdout] test wflambda::wfa::tests::backtrace::test_long_sequences ... ok
[INFO] [stdout] test fasta::tests::test_handle_headers ... ok
[INFO] [stdout] test wflambda::needleman_wunsch::tests::test_align_equal_length ... ok
[INFO] [stdout] test wflambda::needleman_wunsch::tests::test_align_varying_length ... ok
[INFO] [stdout] test wflambda::wfa::tests::align::test_longer_text ... ok
[INFO] [stdout] test tests::test_filter ... ok
[INFO] [stdout] test wflambda::wfa::tests::align::test_longer_query ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 20 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 0.38s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "88544289b09a492709ce8291c5a094eaec4754eb4776643ffa0b31867d5baa66", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "88544289b09a492709ce8291c5a094eaec4754eb4776643ffa0b31867d5baa66", kill_on_drop: false }`
[INFO] [stdout] 88544289b09a492709ce8291c5a094eaec4754eb4776643ffa0b31867d5baa66