[INFO] cloning repository https://github.com/chfi/rs-gfa-utils [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/chfi/rs-gfa-utils" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frs-gfa-utils", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frs-gfa-utils'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] c89c468ac28f9c04ab8ca7e10c7224d36ee8791d [INFO] testing chfi/rs-gfa-utils against master#432e145bd5a974c5b6f4dd9b352891bd7502b69d for pr-87041 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frs-gfa-utils" "/workspace/builds/worker-10/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-10/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/chfi/rs-gfa-utils on toolchain 432e145bd5a974c5b6f4dd9b352891bd7502b69d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/chfi/rs-gfa-utils [INFO] finished tweaking git repo https://github.com/chfi/rs-gfa-utils [INFO] tweaked toml for git repo https://github.com/chfi/rs-gfa-utils written to /workspace/builds/worker-10/source/Cargo.toml [INFO] crate git repo https://github.com/chfi/rs-gfa-utils already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 268178f85c5fee3ebafc08ddd49f3899e7af4fb1fd8c3f8a4eb07837c46756a5 [INFO] running `Command { std: "docker" "start" "-a" "268178f85c5fee3ebafc08ddd49f3899e7af4fb1fd8c3f8a4eb07837c46756a5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "268178f85c5fee3ebafc08ddd49f3899e7af4fb1fd8c3f8a4eb07837c46756a5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "268178f85c5fee3ebafc08ddd49f3899e7af4fb1fd8c3f8a4eb07837c46756a5", kill_on_drop: false }` [INFO] [stdout] 268178f85c5fee3ebafc08ddd49f3899e7af4fb1fd8c3f8a4eb07837c46756a5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d3f70bb4d5ca7b6197eb9984bebb7ce8973976d6afbe417896bef7d2fd886b12 [INFO] running `Command { std: "docker" "start" "-a" "d3f70bb4d5ca7b6197eb9984bebb7ce8973976d6afbe417896bef7d2fd886b12", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Compiling proc-macro2 v1.0.18 [INFO] [stderr] Compiling syn v1.0.33 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling lexical-core v0.7.6 [INFO] [stderr] Compiling static_assertions v1.1.0 [INFO] [stderr] Compiling arrayvec v0.5.1 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling rand_core v0.6.1 [INFO] [stderr] Compiling unicode-segmentation v1.6.0 [INFO] [stderr] Compiling number_prefix v0.3.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling fixedbitset v0.2.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.3 [INFO] [stderr] Compiling proc-macro-error v1.0.3 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling wyhash v0.5.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling aho-corasick v0.7.12 [INFO] [stderr] Compiling crossbeam-utils v0.8.1 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling memmap v0.7.0 [INFO] [stderr] Compiling terminal_size v0.1.13 [INFO] [stderr] Compiling termios v0.3.2 [INFO] [stderr] Compiling time v0.1.44 [INFO] [stderr] Compiling clap v2.33.1 [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.0 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling succinct v0.5.2 [INFO] [stderr] Compiling chrono v0.4.19 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling console v0.12.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling syn-mid v0.5.0 [INFO] [stderr] Compiling pretty_env_logger v0.4.0 [INFO] [stderr] Compiling boomphf v0.5.9 [INFO] [stderr] Compiling indicatif v0.15.0 [INFO] [stderr] Compiling serde_derive v1.0.114 [INFO] [stderr] Compiling bytemuck_derive v1.0.0 [INFO] [stderr] Compiling bytemuck v1.4.1 [INFO] [stderr] Compiling structopt-derive v0.4.8 [INFO] [stderr] Compiling structopt v0.3.15 [INFO] [stderr] Compiling serde v1.0.114 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling serde_json v1.0.57 [INFO] [stderr] Compiling gfa v0.10.0 [INFO] [stderr] Compiling three-edge-connected v0.2.2 [INFO] [stderr] Compiling handlegraph v0.7.0-alpha.7 [INFO] [stderr] Compiling saboten v0.1.2-alpha.3 [INFO] [stderr] Compiling gfautil v0.4.0-alpha.5 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `gfa::gfa::Orientation::Forward` [INFO] [stdout] --> src/variants.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use gfa::gfa::Orientation::Forward; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `hash_subpath` [INFO] [stdout] --> src/variants.rs:27:8 [INFO] [stdout] | [INFO] [stdout] 27 | fn hash_subpath(&self, path: usize, from: usize, to: usize) -> Option { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 57.34s [INFO] running `Command { std: "docker" "inspect" "d3f70bb4d5ca7b6197eb9984bebb7ce8973976d6afbe417896bef7d2fd886b12", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d3f70bb4d5ca7b6197eb9984bebb7ce8973976d6afbe417896bef7d2fd886b12", kill_on_drop: false }` [INFO] [stdout] d3f70bb4d5ca7b6197eb9984bebb7ce8973976d6afbe417896bef7d2fd886b12 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7f938dfdb01f6e583bd2611d439499c1afefe2c052e11592613fa73acdb092a0 [INFO] running `Command { std: "docker" "start" "-a" "7f938dfdb01f6e583bd2611d439499c1afefe2c052e11592613fa73acdb092a0", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling gfautil v0.4.0-alpha.5 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `gfa::gfa::Orientation::Forward` [INFO] [stdout] --> src/variants.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use gfa::gfa::Orientation::Forward; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `hash_subpath` [INFO] [stdout] --> src/variants.rs:27:8 [INFO] [stdout] | [INFO] [stdout] 27 | fn hash_subpath(&self, path: usize, from: usize, to: usize) -> Option { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gfa::gfa::Orientation::Forward` [INFO] [stdout] --> src/variants.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use gfa::gfa::Orientation::Forward; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `hash_subpath` [INFO] [stdout] --> src/variants.rs:27:8 [INFO] [stdout] | [INFO] [stdout] 27 | fn hash_subpath(&self, path: usize, from: usize, to: usize) -> Option { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2m 42s [INFO] running `Command { std: "docker" "inspect" "7f938dfdb01f6e583bd2611d439499c1afefe2c052e11592613fa73acdb092a0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7f938dfdb01f6e583bd2611d439499c1afefe2c052e11592613fa73acdb092a0", kill_on_drop: false }` [INFO] [stdout] 7f938dfdb01f6e583bd2611d439499c1afefe2c052e11592613fa73acdb092a0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 3d1aeb5a02318811f07e2f0f8af842aa5f558e92ea0bec2a14be4e52eabf633e [INFO] running `Command { std: "docker" "start" "-a" "3d1aeb5a02318811f07e2f0f8af842aa5f558e92ea0bec2a14be4e52eabf633e", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `gfa::gfa::Orientation::Forward` [INFO] [stderr] --> src/variants.rs:14:5 [INFO] [stderr] | [INFO] [stderr] 14 | use gfa::gfa::Orientation::Forward; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `hash_subpath` [INFO] [stderr] --> src/variants.rs:27:8 [INFO] [stderr] | [INFO] [stderr] 27 | fn hash_subpath(&self, path: usize, from: usize, to: usize) -> Option { [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 2 warnings emitted [INFO] [stderr] [INFO] [stderr] warning: unused import: `gfa::gfa::Orientation::Forward` [INFO] [stderr] --> src/variants.rs:14:5 [INFO] [stderr] | [INFO] [stderr] 14 | use gfa::gfa::Orientation::Forward; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `hash_subpath` [INFO] [stderr] --> src/variants.rs:27:8 [INFO] [stderr] | [INFO] [stderr] 27 | fn hash_subpath(&self, path: usize, from: usize, to: usize) -> Option { [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: 2 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.12s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/gfautil-03787714ea69b879) [INFO] [stdout] running 2 tests [INFO] [stdout] test commands::convert_names::tests::name_map_path_correct ... ok [INFO] [stdout] test commands::convert_names::tests::converted_gfa_path_correct ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/gfautil-062a60177656c780) [INFO] [stdout] [INFO] [stderr] Running tests/gaf_convert.rs (/opt/rustwide/target/debug/deps/gaf_convert-5f73eb69021dd12a) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stderr] Doc-tests gfautil [INFO] [stdout] test gafpaf_no_overlaps ... ok [INFO] [stdout] test gafpaf_overlaps ... ok [INFO] [stdout] test gafpaf_dels ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "3d1aeb5a02318811f07e2f0f8af842aa5f558e92ea0bec2a14be4e52eabf633e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3d1aeb5a02318811f07e2f0f8af842aa5f558e92ea0bec2a14be4e52eabf633e", kill_on_drop: false }` [INFO] [stdout] 3d1aeb5a02318811f07e2f0f8af842aa5f558e92ea0bec2a14be4e52eabf633e