[INFO] cloning repository https://github.com/chanzuckerberg/idseq-dedup
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/chanzuckerberg/idseq-dedup" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchanzuckerberg%2Fidseq-dedup", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchanzuckerberg%2Fidseq-dedup'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] a2720d7b3d46f6529b632bd823c802d19e7ef3dc
[INFO] testing chanzuckerberg/idseq-dedup against master#432e145bd5a974c5b6f4dd9b352891bd7502b69d for pr-87041
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchanzuckerberg%2Fidseq-dedup" "/workspace/builds/worker-4/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/chanzuckerberg/idseq-dedup on toolchain 432e145bd5a974c5b6f4dd9b352891bd7502b69d
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/chanzuckerberg/idseq-dedup
[INFO] finished tweaking git repo https://github.com/chanzuckerberg/idseq-dedup
[INFO] tweaked toml for git repo https://github.com/chanzuckerberg/idseq-dedup written to /workspace/builds/worker-4/source/Cargo.toml
[INFO] crate git repo https://github.com/chanzuckerberg/idseq-dedup already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 1e6e86b018b7420f224d70b7dda1839ba7d0699a913d20ef9afa65520a99ed7f
[INFO] running `Command { std: "docker" "start" "-a" "1e6e86b018b7420f224d70b7dda1839ba7d0699a913d20ef9afa65520a99ed7f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1e6e86b018b7420f224d70b7dda1839ba7d0699a913d20ef9afa65520a99ed7f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1e6e86b018b7420f224d70b7dda1839ba7d0699a913d20ef9afa65520a99ed7f", kill_on_drop: false }`
[INFO] [stdout] 1e6e86b018b7420f224d70b7dda1839ba7d0699a913d20ef9afa65520a99ed7f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6deb5691ac5f61006fab65bd695a7c1bf901c3e9d185b79bc4934c321f39e5dc
[INFO] running `Command { std: "docker" "start" "-a" "6deb5691ac5f61006fab65bd695a7c1bf901c3e9d185b79bc4934c321f39e5dc", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.24
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling syn v1.0.42
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling serde_derive v1.0.116
[INFO] [stderr]    Compiling libc v0.2.78
[INFO] [stderr]    Compiling serde v1.0.116
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling regex-syntax v0.6.18
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling bit-vec v0.6.2
[INFO] [stderr]    Compiling array-macro v1.0.5
[INFO] [stderr]    Compiling fixedbitset v0.2.0
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]    Compiling strum v0.18.0
[INFO] [stderr]    Compiling bytecount v0.6.0
[INFO] [stderr]    Compiling triple_accel v0.3.4
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling simple-error v0.2.2
[INFO] [stderr]    Compiling aho-corasick v0.7.13
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling matrixmultiply v0.2.3
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling indexmap v1.6.0
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling getrandom v0.1.15
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.1.0
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling snafu-derive v0.6.9
[INFO] [stderr]    Compiling enum-map-derive v0.4.3
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling enum-map v0.6.3
[INFO] [stderr]    Compiling snafu v0.6.9
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bstr v0.2.13
[INFO] [stderr]    Compiling multimap v0.8.2
[INFO] [stderr]    Compiling bio-types v0.7.0
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling idseq-dedup v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 50.19s
[INFO] running `Command { std: "docker" "inspect" "6deb5691ac5f61006fab65bd695a7c1bf901c3e9d185b79bc4934c321f39e5dc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6deb5691ac5f61006fab65bd695a7c1bf901c3e9d185b79bc4934c321f39e5dc", kill_on_drop: false }`
[INFO] [stdout] 6deb5691ac5f61006fab65bd695a7c1bf901c3e9d185b79bc4934c321f39e5dc
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d41754e90b74bd9d99a3601a38767399d28674249c0f70ba44996d36cf00d78e
[INFO] running `Command { std: "docker" "start" "-a" "d41754e90b74bd9d99a3601a38767399d28674249c0f70ba44996d36cf00d78e", kill_on_drop: false }`
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling tempfile v3.1.0
[INFO] [stderr]    Compiling idseq-dedup v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 4.63s
[INFO] running `Command { std: "docker" "inspect" "d41754e90b74bd9d99a3601a38767399d28674249c0f70ba44996d36cf00d78e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d41754e90b74bd9d99a3601a38767399d28674249c0f70ba44996d36cf00d78e", kill_on_drop: false }`
[INFO] [stdout] d41754e90b74bd9d99a3601a38767399d28674249c0f70ba44996d36cf00d78e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 9d6e74d14ec7ee44586ccb69aa1e5d2e9ce41c136f0c6bdc2b61843b7eded5b4
[INFO] running `Command { std: "docker" "start" "-a" "9d6e74d14ec7ee44586ccb69aa1e5d2e9ce41c136f0c6bdc2b61843b7eded5b4", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.07s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/idseq_dedup-588784fe4eb96e17)
[INFO] [stdout] running 11 tests
[INFO] [stdout] test clusters::test::test_write_cluster_sizes ... ok
[INFO] [stdout] test paired::test::test_r1_error ... ok
[INFO] [stdout] test paired::test::test_different_ids ... ok
[INFO] [stdout] test paired::test::test_r1_longer ... ok
[INFO] [stdout] test paired::test::test_r2_longer ... ok
[INFO] [stdout] test clusters::test::test_insert_pair ... ok
[INFO] [stdout] test paired::test::test_r2_error ... ok
[INFO] [stdout] test clusters::test::test_insert_single ... ok
[INFO] [stdout] test test::test_run_dedup_single ... ok
[INFO] [stdout] test test::test_run_dedup_paired ... ok
[INFO] [stdout] test test::test_run_dedup_paired_mismatched_files ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "9d6e74d14ec7ee44586ccb69aa1e5d2e9ce41c136f0c6bdc2b61843b7eded5b4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9d6e74d14ec7ee44586ccb69aa1e5d2e9ce41c136f0c6bdc2b61843b7eded5b4", kill_on_drop: false }`
[INFO] [stdout] 9d6e74d14ec7ee44586ccb69aa1e5d2e9ce41c136f0c6bdc2b61843b7eded5b4