[INFO] cloning repository https://github.com/HopedWall/rs-vgaligner [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/HopedWall/rs-vgaligner" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2Frs-vgaligner", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2Frs-vgaligner'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 3f51e57057f6a3df4d3d0b3be268de75401f8da9 [INFO] testing HopedWall/rs-vgaligner against master#432e145bd5a974c5b6f4dd9b352891bd7502b69d for pr-87041 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2Frs-vgaligner" "/workspace/builds/worker-14/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-14/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/HopedWall/rs-vgaligner on toolchain 432e145bd5a974c5b6f4dd9b352891bd7502b69d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/HopedWall/rs-vgaligner [INFO] finished tweaking git repo https://github.com/HopedWall/rs-vgaligner [INFO] tweaked toml for git repo https://github.com/HopedWall/rs-vgaligner written to /workspace/builds/worker-14/source/Cargo.toml [INFO] crate git repo https://github.com/HopedWall/rs-vgaligner already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f8a22fc8a193347d172b6b8d4f1e441e3759b3d91a1ffa53d43eefe55d4ed48e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f8a22fc8a193347d172b6b8d4f1e441e3759b3d91a1ffa53d43eefe55d4ed48e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f8a22fc8a193347d172b6b8d4f1e441e3759b3d91a1ffa53d43eefe55d4ed48e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f8a22fc8a193347d172b6b8d4f1e441e3759b3d91a1ffa53d43eefe55d4ed48e", kill_on_drop: false }` [INFO] [stdout] f8a22fc8a193347d172b6b8d4f1e441e3759b3d91a1ffa53d43eefe55d4ed48e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 9a1ffecc54119676794104cff5fd2be7cb8ed9e06d72277ec41d5fcb15876cb2 [INFO] running `Command { std: "docker" "start" "-a" "9a1ffecc54119676794104cff5fd2be7cb8ed9e06d72277ec41d5fcb15876cb2", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.60 [INFO] [stderr] Compiling serde_derive v1.0.125 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling once_cell v1.7.0 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling lexical-core v0.7.5 [INFO] [stderr] Compiling regex-syntax v0.6.22 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling getrandom v0.2.2 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Compiling array-macro v1.0.5 [INFO] [stderr] Compiling triple_accel v0.3.4 [INFO] [stderr] Compiling newtype_derive v0.1.4 [INFO] [stderr] Compiling rand_core v0.6.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling crossbeam-utils v0.8.3 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling indexmap v1.6.1 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling substring v1.4.5 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling heck v0.3.2 [INFO] [stderr] Compiling matrixmultiply v0.2.4 [INFO] [stderr] Compiling thread_local v1.1.3 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling itertools v0.10.1 [INFO] [stderr] Compiling wyhash v0.5.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling ahash v0.7.2 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.3 [INFO] [stderr] Compiling crossbeam-channel v0.5.0 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling ordered-float v1.1.1 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling regex v1.4.3 [INFO] [stderr] Compiling darling_core v0.12.4 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling bytemuck_derive v1.0.1 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling darling_macro v0.12.4 [INFO] [stderr] Compiling enum-map v0.6.4 [INFO] [stderr] Compiling bytemuck v1.5.1 [INFO] [stderr] Compiling darling v0.12.4 [INFO] [stderr] Compiling serde_with_macros v1.4.1 [INFO] [stderr] Compiling snafu v0.6.10 [INFO] [stderr] Compiling bio-types v0.10.0 [INFO] [stderr] Compiling serde v1.0.125 [INFO] [stderr] Compiling bstr v0.2.15 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling serde_json v1.0.64 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling multimap v0.8.2 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling serde_with v1.8.1 [INFO] [stderr] Compiling boomphf v0.5.9 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling csv v1.1.5 [INFO] [stderr] Compiling gfa v0.8.0 [INFO] [stderr] Compiling handlegraph v0.5.0 [INFO] [stderr] Compiling vgaligner v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `handlegraph::handlegraph::HandleGraph` [INFO] [stdout] --> src/subcommands/index_main.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use handlegraph::handlegraph::HandleGraph; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ahash::RandomState` [INFO] [stdout] --> src/index.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use ahash::RandomState; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `generate_pos_on_ref` [INFO] [stdout] --> src/index.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | generate_pos_on_ref, generate_pos_on_ref_2, Kmer, KmerPos, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::cmp::Ordering` [INFO] [stdout] --> src/index.rs:16:5 [INFO] [stdout] | [INFO] [stdout] 16 | use std::cmp::Ordering; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bstr::io::BufReadExt` [INFO] [stdout] --> src/io.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use bstr::io::BufReadExt; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `itertools::Itertools` [INFO] [stdout] --> src/io.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use itertools::Itertools; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::io` [INFO] [stdout] --> src/io.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use std::io; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Deref`, `Index` [INFO] [stdout] --> src/kmer.rs:17:16 [INFO] [stdout] | [INFO] [stdout] 17 | use std::ops::{Index, Deref}; [INFO] [stdout] | ^^^^^ ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Read` [INFO] [stdout] --> src/serialization.rs:2:22 [INFO] [stdout] | [INFO] [stdout] 2 | use std::io::{Write, Read, BufReader}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/io.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `in_path_file` [INFO] [stdout] --> src/subcommands/map_main.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let in_path_file = matches.value_of("input-file").unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_in_path_file` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `max_gap_length` [INFO] [stdout] --> src/subcommands/map_main.rs:12:9 [INFO] [stdout] | [INFO] [stdout] 12 | let max_gap_length = matches [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_max_gap_length` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `max_mismatch_rate` [INFO] [stdout] --> src/subcommands/map_main.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | let max_mismatch_rate = matches [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_max_mismatch_rate` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `chain_overlap_max` [INFO] [stdout] --> src/subcommands/map_main.rs:24:9 [INFO] [stdout] | [INFO] [stdout] 24 | let chain_overlap_max = matches [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_chain_overlap_max` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `chain_min_anchors` [INFO] [stdout] --> src/subcommands/map_main.rs:30:9 [INFO] [stdout] | [INFO] [stdout] 30 | let chain_min_anchors = matches [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_chain_min_anchors` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `align_best_n` [INFO] [stdout] --> src/subcommands/map_main.rs:37:9 [INFO] [stdout] | [INFO] [stdout] 37 | let align_best_n = matches [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_align_best_n` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `write_chains` [INFO] [stdout] --> src/subcommands/map_main.rs:43:9 [INFO] [stdout] | [INFO] [stdout] 43 | let write_chains = matches [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_write_chains` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `write_superchains` [INFO] [stdout] --> src/subcommands/map_main.rs:46:9 [INFO] [stdout] | [INFO] [stdout] 46 | let write_superchains = matches [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_write_superchains` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `dont_align` [INFO] [stdout] --> src/subcommands/map_main.rs:49:9 [INFO] [stdout] | [INFO] [stdout] 49 | let dont_align = matches [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dont_align` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/index.rs:119:13 [INFO] [stdout] | [INFO] [stdout] 119 | let mut kmers_on_graph: Vec = match graph.paths.is_empty() { [INFO] [stdout] | ----^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/index.rs:151:13 [INFO] [stdout] | [INFO] [stdout] 151 | let mut kmers_pos_on_ref : Vec = [INFO] [stdout] | ----^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/io.rs:27:9 [INFO] [stdout] | [INFO] [stdout] 27 | let mut file = File::open(filename)?; [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/kmer.rs:262:9 [INFO] [stdout] | [INFO] [stdout] 262 | let mut forward_kmers = generate_kmers_linearly_forward(graph, k, edge_max, degree_max); [INFO] [stdout] | ----^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/kmer.rs:263:9 [INFO] [stdout] | [INFO] [stdout] 263 | let mut reverse_kmers = generate_kmers_linearly_reverse(graph, k, edge_max, degree_max); [INFO] [stdout] | ----^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `name` [INFO] [stdout] --> src/io.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | name : String, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq` [INFO] [stdout] --> src/io.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | seq : String [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 26 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3m 03s [INFO] running `Command { std: "docker" "inspect" "9a1ffecc54119676794104cff5fd2be7cb8ed9e06d72277ec41d5fcb15876cb2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9a1ffecc54119676794104cff5fd2be7cb8ed9e06d72277ec41d5fcb15876cb2", kill_on_drop: false }` [INFO] [stdout] 9a1ffecc54119676794104cff5fd2be7cb8ed9e06d72277ec41d5fcb15876cb2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 7ad31944cf1bdb2e618f1ef18babb546fdbc5066d1f03a0b4c36ea30e01a671c [INFO] running `Command { std: "docker" "start" "-a" "7ad31944cf1bdb2e618f1ef18babb546fdbc5066d1f03a0b4c36ea30e01a671c", kill_on_drop: false }` [INFO] [stderr] Compiling vgaligner v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `handlegraph::handlegraph::HandleGraph` [INFO] [stdout] --> src/subcommands/index_main.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use handlegraph::handlegraph::HandleGraph; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ahash::RandomState` [INFO] [stdout] --> src/index.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use ahash::RandomState; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::cmp::Ordering` [INFO] [stdout] --> src/index.rs:16:5 [INFO] [stdout] | [INFO] [stdout] 16 | use std::cmp::Ordering; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `handlegraph::handle::Handle` [INFO] [stdout] --> src/index.rs:259:9 [INFO] [stdout] | [INFO] [stdout] 259 | use handlegraph::handle::Handle; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bstr::io::BufReadExt` [INFO] [stdout] --> src/io.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use bstr::io::BufReadExt; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `itertools::Itertools` [INFO] [stdout] --> src/io.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use itertools::Itertools; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::io` [INFO] [stdout] --> src/io.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use std::io; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Deref`, `Index` [INFO] [stdout] --> src/kmer.rs:17:16 [INFO] [stdout] | [INFO] [stdout] 17 | use std::ops::{Index, Deref}; [INFO] [stdout] | ^^^^^ ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Read` [INFO] [stdout] --> src/serialization.rs:2:22 [INFO] [stdout] | [INFO] [stdout] 2 | use std::io::{Write, Read, BufReader}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/io.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `in_path_file` [INFO] [stdout] --> src/subcommands/map_main.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let in_path_file = matches.value_of("input-file").unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_in_path_file` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `max_gap_length` [INFO] [stdout] --> src/subcommands/map_main.rs:12:9 [INFO] [stdout] | [INFO] [stdout] 12 | let max_gap_length = matches [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_max_gap_length` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `max_mismatch_rate` [INFO] [stdout] --> src/subcommands/map_main.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | let max_mismatch_rate = matches [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_max_mismatch_rate` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `chain_overlap_max` [INFO] [stdout] --> src/subcommands/map_main.rs:24:9 [INFO] [stdout] | [INFO] [stdout] 24 | let chain_overlap_max = matches [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_chain_overlap_max` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `chain_min_anchors` [INFO] [stdout] --> src/subcommands/map_main.rs:30:9 [INFO] [stdout] | [INFO] [stdout] 30 | let chain_min_anchors = matches [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_chain_min_anchors` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `align_best_n` [INFO] [stdout] --> src/subcommands/map_main.rs:37:9 [INFO] [stdout] | [INFO] [stdout] 37 | let align_best_n = matches [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_align_best_n` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `write_chains` [INFO] [stdout] --> src/subcommands/map_main.rs:43:9 [INFO] [stdout] | [INFO] [stdout] 43 | let write_chains = matches [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_write_chains` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `write_superchains` [INFO] [stdout] --> src/subcommands/map_main.rs:46:9 [INFO] [stdout] | [INFO] [stdout] 46 | let write_superchains = matches [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_write_superchains` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `dont_align` [INFO] [stdout] --> src/subcommands/map_main.rs:49:9 [INFO] [stdout] | [INFO] [stdout] 49 | let dont_align = matches [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dont_align` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `kmers_positions_on_ref` [INFO] [stdout] --> src/index.rs:655:13 [INFO] [stdout] | [INFO] [stdout] 655 | let kmers_positions_on_ref: Vec = [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_kmers_positions_on_ref` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/index.rs:119:13 [INFO] [stdout] | [INFO] [stdout] 119 | let mut kmers_on_graph: Vec = match graph.paths.is_empty() { [INFO] [stdout] | ----^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/index.rs:151:13 [INFO] [stdout] | [INFO] [stdout] 151 | let mut kmers_pos_on_ref : Vec = [INFO] [stdout] | ----^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/index.rs:425:13 [INFO] [stdout] | [INFO] [stdout] 425 | let mut kmers_on_graph = generate_kmers(&graph, 3, Some(100), Some(100)); [INFO] [stdout] | ----^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/io.rs:27:9 [INFO] [stdout] | [INFO] [stdout] 27 | let mut file = File::open(filename)?; [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/kmer.rs:262:9 [INFO] [stdout] | [INFO] [stdout] 262 | let mut forward_kmers = generate_kmers_linearly_forward(graph, k, edge_max, degree_max); [INFO] [stdout] | ----^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/kmer.rs:263:9 [INFO] [stdout] | [INFO] [stdout] 263 | let mut reverse_kmers = generate_kmers_linearly_reverse(graph, k, edge_max, degree_max); [INFO] [stdout] | ----^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `name` [INFO] [stdout] --> src/io.rs:19:5 [INFO] [stdout] | [INFO] [stdout] 19 | name : String, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `seq` [INFO] [stdout] --> src/io.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | seq : String [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 28 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 9.92s [INFO] running `Command { std: "docker" "inspect" "7ad31944cf1bdb2e618f1ef18babb546fdbc5066d1f03a0b4c36ea30e01a671c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7ad31944cf1bdb2e618f1ef18babb546fdbc5066d1f03a0b4c36ea30e01a671c", kill_on_drop: false }` [INFO] [stdout] 7ad31944cf1bdb2e618f1ef18babb546fdbc5066d1f03a0b4c36ea30e01a671c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] e4c94a067e970870d9c9a005c3c577aa151d08cff11505be8e9feb0759d4af02 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e4c94a067e970870d9c9a005c3c577aa151d08cff11505be8e9feb0759d4af02", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `handlegraph::handlegraph::HandleGraph` [INFO] [stderr] --> src/subcommands/index_main.rs:6:5 [INFO] [stderr] | [INFO] [stderr] 6 | use handlegraph::handlegraph::HandleGraph; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `ahash::RandomState` [INFO] [stderr] --> src/index.rs:1:5 [INFO] [stderr] | [INFO] [stderr] 1 | use ahash::RandomState; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::cmp::Ordering` [INFO] [stderr] --> src/index.rs:16:5 [INFO] [stderr] | [INFO] [stderr] 16 | use std::cmp::Ordering; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `handlegraph::handle::Handle` [INFO] [stderr] --> src/index.rs:259:9 [INFO] [stderr] | [INFO] [stderr] 259 | use handlegraph::handle::Handle; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `bstr::io::BufReadExt` [INFO] [stderr] --> src/io.rs:4:5 [INFO] [stderr] | [INFO] [stderr] 4 | use bstr::io::BufReadExt; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `itertools::Itertools` [INFO] [stderr] --> src/io.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | use itertools::Itertools; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::io` [INFO] [stderr] --> src/io.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | use std::io; [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `Deref`, `Index` [INFO] [stderr] --> src/kmer.rs:17:16 [INFO] [stderr] | [INFO] [stderr] 17 | use std::ops::{Index, Deref}; [INFO] [stderr] | ^^^^^ ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `Read` [INFO] [stderr] --> src/serialization.rs:2:22 [INFO] [stderr] | [INFO] [stderr] 2 | use std::io::{Write, Read, BufReader}; [INFO] [stderr] | ^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `rayon::prelude` [INFO] [stderr] --> src/io.rs:9:5 [INFO] [stderr] | [INFO] [stderr] 9 | use rayon::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `in_path_file` [INFO] [stderr] --> src/subcommands/map_main.rs:10:9 [INFO] [stderr] | [INFO] [stderr] 10 | let in_path_file = matches.value_of("input-file").unwrap(); [INFO] [stderr] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_in_path_file` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `max_gap_length` [INFO] [stderr] --> src/subcommands/map_main.rs:12:9 [INFO] [stderr] | [INFO] [stderr] 12 | let max_gap_length = matches [INFO] [stderr] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_max_gap_length` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `max_mismatch_rate` [INFO] [stderr] --> src/subcommands/map_main.rs:18:9 [INFO] [stderr] | [INFO] [stderr] 18 | let max_mismatch_rate = matches [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_max_mismatch_rate` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `chain_overlap_max` [INFO] [stderr] --> src/subcommands/map_main.rs:24:9 [INFO] [stderr] | [INFO] [stderr] 24 | let chain_overlap_max = matches [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_chain_overlap_max` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `chain_min_anchors` [INFO] [stderr] --> src/subcommands/map_main.rs:30:9 [INFO] [stderr] | [INFO] [stderr] 30 | let chain_min_anchors = matches [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_chain_min_anchors` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `align_best_n` [INFO] [stderr] --> src/subcommands/map_main.rs:37:9 [INFO] [stderr] | [INFO] [stderr] 37 | let align_best_n = matches [INFO] [stderr] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_align_best_n` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `write_chains` [INFO] [stderr] --> src/subcommands/map_main.rs:43:9 [INFO] [stderr] | [INFO] [stderr] 43 | let write_chains = matches [INFO] [stderr] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_write_chains` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `write_superchains` [INFO] [stderr] --> src/subcommands/map_main.rs:46:9 [INFO] [stderr] | [INFO] [stderr] 46 | let write_superchains = matches [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_write_superchains` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `dont_align` [INFO] [stderr] --> src/subcommands/map_main.rs:49:9 [INFO] [stderr] | [INFO] [stderr] 49 | let dont_align = matches [INFO] [stderr] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_dont_align` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `kmers_positions_on_ref` [INFO] [stderr] --> src/index.rs:655:13 [INFO] [stderr] | [INFO] [stderr] 655 | let kmers_positions_on_ref: Vec = [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_kmers_positions_on_ref` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/index.rs:119:13 [INFO] [stderr] | [INFO] [stderr] 119 | let mut kmers_on_graph: Vec = match graph.paths.is_empty() { [INFO] [stderr] | ----^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/index.rs:151:13 [INFO] [stderr] | [INFO] [stderr] 151 | let mut kmers_pos_on_ref : Vec = [INFO] [stderr] | ----^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/index.rs:425:13 [INFO] [stderr] | [INFO] [stderr] 425 | let mut kmers_on_graph = generate_kmers(&graph, 3, Some(100), Some(100)); [INFO] [stderr] | ----^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/io.rs:27:9 [INFO] [stderr] | [INFO] [stderr] 27 | let mut file = File::open(filename)?; [INFO] [stderr] | ----^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/kmer.rs:262:9 [INFO] [stderr] | [INFO] [stderr] 262 | let mut forward_kmers = generate_kmers_linearly_forward(graph, k, edge_max, degree_max); [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/kmer.rs:263:9 [INFO] [stderr] | [INFO] [stderr] 263 | let mut reverse_kmers = generate_kmers_linearly_reverse(graph, k, edge_max, degree_max); [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: field is never read: `name` [INFO] [stderr] --> src/io.rs:19:5 [INFO] [stderr] | [INFO] [stderr] 19 | name : String, [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: field is never read: `seq` [INFO] [stderr] --> src/io.rs:20:5 [INFO] [stderr] | [INFO] [stderr] 20 | seq : String [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: 28 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.32s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/vgaligner-d34fe4fcf917dd95) [INFO] [stdout] [INFO] [stdout] running 16 tests [INFO] [stdout] test dna::test_is_dna ... ok [INFO] [stdout] test index::test::test_forward_creation ... ok [INFO] [stdout] test index::test::test_simple_graph_2 ... ok [INFO] [stdout] test index::test::test_assert_both_functions_find_same_kmers ... ok [INFO] [stdout] test index::test::test_kmers_graph_generation ... ok [INFO] [stdout] test dna::test_revcomp ... ok [INFO] [stdout] test utils::test_simple_rank_2 ... ok [INFO] [stdout] test utils::test_simple_rank_1_a ... ok [INFO] [stdout] test utils::test_simple_rank_3 ... ok [INFO] [stdout] test utils::test_simple_rank_1_b ... ok [INFO] [stdout] test index::test::test_simple_path ... ok [INFO] [stdout] test io::test::test_read_fastq ... ok [INFO] [stdout] test io::test::test_read_fasta ... ok [INFO] [stdout] test index::test::test_table ... FAILED [INFO] [stdout] test index::test::test_generate_hash ... FAILED [INFO] [stdout] test index::test::test_serialization ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- index::test::test_table stdout ---- [INFO] [stdout] thread 'index::test::test_table' panicked at 'internal error: entered unreachable code: This should never be called', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/ahash-0.7.2/src/fallback_hash.rs:235:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5618ea2b6960 - std::backtrace_rs::backtrace::libunwind::trace::h706b838f5bbd876b [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stdout] 1: 0x5618ea2b6960 - std::backtrace_rs::backtrace::trace_unsynchronized::hc15f29ae7822b7b8 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x5618ea2b6960 - std::sys_common::backtrace::_print_fmt::h7c580c971f91926c [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x5618ea2b6960 - ::fmt::h2a772198c4032452 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x5618ea2d936c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/fmt/mod.rs:1115:17 [INFO] [stdout] 5: 0x5618ea2b35d5 - std::io::Write::write_fmt::h583dff5009d01a9f [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/io/mod.rs:1663:15 [INFO] [stdout] 6: 0x5618ea2b8b3b - std::sys_common::backtrace::_print::h5b3c171e6f864ae4 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x5618ea2b8b3b - std::sys_common::backtrace::print::h93b9e9ed2a98e611 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x5618ea2b8b3b - std::panicking::default_hook::{{closure}}::hd8da92bb68d520c5 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:208:50 [INFO] [stdout] 9: 0x5618ea2b864c - std::panicking::default_hook::hdbc8b2951c5afbab [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:222:9 [INFO] [stdout] 10: 0x5618ea2b9204 - std::panicking::rust_panic_with_hook::h8a4c841655926f4e [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:622:17 [INFO] [stdout] 11: 0x5618ea2b8ce7 - std::panicking::begin_panic_handler::{{closure}}::h471b6bc74904b7b0 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:519:13 [INFO] [stdout] 12: 0x5618ea2b6e5c - std::sys_common::backtrace::__rust_end_short_backtrace::h309f5c707f29932f [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 13: 0x5618ea2b8c49 - rust_begin_unwind [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:515:5 [INFO] [stdout] 14: 0x5618ea0dd6c1 - core::panicking::panic_fmt::hcf5f6d96e1dd7099 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/panicking.rs:92:14 [INFO] [stdout] 15: 0x5618ea10cc26 - ::write::h8c786d2e72dce11d [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/ahash-0.7.2/src/fallback_hash.rs:235:9 [INFO] [stdout] 16: 0x5618ea0fe304 - core::hash::impls::::hash::h069d0d71a18a35c7 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/hash/mod.rs:682:13 [INFO] [stdout] 17: 0x5618ea0ff544 - ::hash::h75a49fd6467af845 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/alloc/src/string.rs:2134:9 [INFO] [stdout] 18: 0x5618ea0fe366 - core::hash::impls::::hash::hc174e0aa3a9150d8 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/hash/mod.rs:749:13 [INFO] [stdout] 19: 0x5618ea100a86 - ::hash_as_u64::hcc6cf1bc5ffde6fc [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/ahash-0.7.2/src/random_state.rs:243:9 [INFO] [stdout] 20: 0x5618ea0ebf30 - ::get_hash::h3cfaf31bbaef8453 [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/ahash-0.7.2/src/specialize.rs:67:17 [INFO] [stdout] 21: 0x5618ea12a090 - vgaligner::kmer::generate_hash::hebd2e676a955de65 [INFO] [stdout] at /opt/rustwide/workdir/src/kmer.rs:702:5 [INFO] [stdout] 22: 0x5618ea129695 - vgaligner::kmer::generate_pos_on_ref_2::h31b9c7a3c64daace [INFO] [stdout] at /opt/rustwide/workdir/src/kmer.rs:605:38 [INFO] [stdout] 23: 0x5618ea156d6f - vgaligner::index::test::test_table::h932e410049ddaeeb [INFO] [stdout] at /opt/rustwide/workdir/src/index.rs:578:13 [INFO] [stdout] 24: 0x5618ea156a5a - vgaligner::index::test::test_table::{{closure}}::hb68dda4e1c3516c0 [INFO] [stdout] at /opt/rustwide/workdir/src/index.rs:561:5 [INFO] [stdout] 25: 0x5618ea14938e - core::ops::function::FnOnce::call_once::h079596fd0e35e747 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 26: 0x5618ea1c7273 - core::ops::function::FnOnce::call_once::h99a97b0ff983bd25 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 27: 0x5618ea1c7273 - test::__rust_begin_short_backtrace::h8fe0d26ed1584e50 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/test/src/lib.rs:577:5 [INFO] [stdout] 28: 0x5618ea1c5d00 - as core::ops::function::FnOnce>::call_once::he6b90e352f394d8f [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 29: 0x5618ea1c5d00 - as core::ops::function::FnOnce<()>>::call_once::h1c05475e029700b8 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panic.rs:347:9 [INFO] [stdout] 30: 0x5618ea1c5d00 - std::panicking::try::do_call::he6de943476ae628a [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:401:40 [INFO] [stdout] 31: 0x5618ea1c5d00 - std::panicking::try::ha21937b8feb06f89 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:365:19 [INFO] [stdout] 32: 0x5618ea1c5d00 - std::panic::catch_unwind::ha79830b3325c9fa6 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panic.rs:434:14 [INFO] [stdout] 33: 0x5618ea1c5d00 - test::run_test_in_process::h1ab180b83ee2d5b5 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/test/src/lib.rs:600:18 [INFO] [stdout] 34: 0x5618ea1c5d00 - test::run_test::run_test_inner::{{closure}}::h8258ffe088f187a1 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/test/src/lib.rs:492:39 [INFO] [stdout] 35: 0x5618ea19f2c2 - test::run_test::run_test_inner::{{closure}}::hc697b214abd32bc6 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/test/src/lib.rs:519:37 [INFO] [stdout] 36: 0x5618ea19f2c2 - std::sys_common::backtrace::__rust_begin_short_backtrace::h64de0d3f894854a9 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 37: 0x5618ea1a2f18 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h1fd98fc86e533ece [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/thread/mod.rs:476:17 [INFO] [stdout] 38: 0x5618ea1a2f18 - as core::ops::function::FnOnce<()>>::call_once::h4e2a7abf702e4cfd [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panic.rs:347:9 [INFO] [stdout] 39: 0x5618ea1a2f18 - std::panicking::try::do_call::h4496392321a3c8c0 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:401:40 [INFO] [stdout] 40: 0x5618ea1a2f18 - std::panicking::try::hf1e14258e04e8e9a [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:365:19 [INFO] [stdout] 41: 0x5618ea1a2f18 - std::panic::catch_unwind::hb72c3777cd55642f [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panic.rs:434:14 [INFO] [stdout] 42: 0x5618ea1a2f18 - std::thread::Builder::spawn_unchecked::{{closure}}::h2d7915a5910e148e [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/thread/mod.rs:475:30 [INFO] [stdout] 43: 0x5618ea1a2f18 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h83fd2f1ef5be797c [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 44: 0x5618ea2bdef7 - as core::ops::function::FnOnce>::call_once::ha8b1d5a0092467fc [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 45: 0x5618ea2bdef7 - as core::ops::function::FnOnce>::call_once::h4b9f24ec4e8a879e [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 46: 0x5618ea2bdef7 - std::sys::unix::thread::Thread::new::thread_start::h2a0e98fbc4ab4c32 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys/unix/thread.rs:72:17 [INFO] [stdout] 47: 0x7f820ed08609 - start_thread [INFO] [stdout] 48: 0x7f820eada293 - clone [INFO] [stdout] 49: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- index::test::test_generate_hash stdout ---- [INFO] [stdout] thread 'index::test::test_generate_hash' panicked at 'internal error: entered unreachable code: This should never be called', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/ahash-0.7.2/src/fallback_hash.rs:235:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5618ea2b6960 - std::backtrace_rs::backtrace::libunwind::trace::h706b838f5bbd876b [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stdout] 1: 0x5618ea2b6960 - std::backtrace_rs::backtrace::trace_unsynchronized::hc15f29ae7822b7b8 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x5618ea2b6960 - std::sys_common::backtrace::_print_fmt::h7c580c971f91926c [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x5618ea2b6960 - ::fmt::h2a772198c4032452 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x5618ea2d936c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/fmt/mod.rs:1115:17 [INFO] [stdout] 5: 0x5618ea2b35d5 - std::io::Write::write_fmt::h583dff5009d01a9f [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/io/mod.rs:1663:15 [INFO] [stdout] 6: 0x5618ea2b8b3b - std::sys_common::backtrace::_print::h5b3c171e6f864ae4 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x5618ea2b8b3b - std::sys_common::backtrace::print::h93b9e9ed2a98e611 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x5618ea2b8b3b - std::panicking::default_hook::{{closure}}::hd8da92bb68d520c5 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:208:50 [INFO] [stdout] 9: 0x5618ea2b864c - std::panicking::default_hook::hdbc8b2951c5afbab [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:222:9 [INFO] [stdout] 10: 0x5618ea2b9204 - std::panicking::rust_panic_with_hook::h8a4c841655926f4e [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:622:17 [INFO] [stdout] 11: 0x5618ea2b8ce7 - std::panicking::begin_panic_handler::{{closure}}::h471b6bc74904b7b0 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:519:13 [INFO] [stdout] 12: 0x5618ea2b6e5c - std::sys_common::backtrace::__rust_end_short_backtrace::h309f5c707f29932f [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 13: 0x5618ea2b8c49 - rust_begin_unwind [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:515:5 [INFO] [stdout] 14: 0x5618ea0dd6c1 - core::panicking::panic_fmt::hcf5f6d96e1dd7099 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/panicking.rs:92:14 [INFO] [stdout] 15: 0x5618ea10cc26 - ::write::h8c786d2e72dce11d [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/ahash-0.7.2/src/fallback_hash.rs:235:9 [INFO] [stdout] 16: 0x5618ea0fe304 - core::hash::impls::::hash::h069d0d71a18a35c7 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/hash/mod.rs:682:13 [INFO] [stdout] 17: 0x5618ea0ff544 - ::hash::h75a49fd6467af845 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/alloc/src/string.rs:2134:9 [INFO] [stdout] 18: 0x5618ea0fe366 - core::hash::impls::::hash::hc174e0aa3a9150d8 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/hash/mod.rs:749:13 [INFO] [stdout] 19: 0x5618ea100a86 - ::hash_as_u64::hcc6cf1bc5ffde6fc [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/ahash-0.7.2/src/random_state.rs:243:9 [INFO] [stdout] 20: 0x5618ea0ebf30 - ::get_hash::h3cfaf31bbaef8453 [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/ahash-0.7.2/src/specialize.rs:67:17 [INFO] [stdout] 21: 0x5618ea12a090 - vgaligner::kmer::generate_hash::hebd2e676a955de65 [INFO] [stdout] at /opt/rustwide/workdir/src/kmer.rs:702:5 [INFO] [stdout] 22: 0x5618ea156847 - vgaligner::index::test::test_generate_hash::h9f69d83be64f7313 [INFO] [stdout] at /opt/rustwide/workdir/src/index.rs:552:26 [INFO] [stdout] 23: 0x5618ea15680a - vgaligner::index::test::test_generate_hash::{{closure}}::hf56eaf204539a66a [INFO] [stdout] at /opt/rustwide/workdir/src/index.rs:550:5 [INFO] [stdout] 24: 0x5618ea14996e - core::ops::function::FnOnce::call_once::hc36f1101a2847c8a [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 25: 0x5618ea1c7273 - core::ops::function::FnOnce::call_once::h99a97b0ff983bd25 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 26: 0x5618ea1c7273 - test::__rust_begin_short_backtrace::h8fe0d26ed1584e50 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/test/src/lib.rs:577:5 [INFO] [stdout] 27: 0x5618ea1c5d00 - as core::ops::function::FnOnce>::call_once::he6b90e352f394d8f [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 28: 0x5618ea1c5d00 - as core::ops::function::FnOnce<()>>::call_once::h1c05475e029700b8 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panic.rs:347:9 [INFO] [stdout] 29: 0x5618ea1c5d00 - std::panicking::try::do_call::he6de943476ae628a [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:401:40 [INFO] [stdout] 30: 0x5618ea1c5d00 - std::panicking::try::ha21937b8feb06f89 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:365:19 [INFO] [stdout] 31: 0x5618ea1c5d00 - std::panic::catch_unwind::ha79830b3325c9fa6 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panic.rs:434:14 [INFO] [stdout] 32: 0x5618ea1c5d00 - test::run_test_in_process::h1ab180b83ee2d5b5 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/test/src/lib.rs:600:18 [INFO] [stdout] 33: 0x5618ea1c5d00 - test::run_test::run_test_inner::{{closure}}::h8258ffe088f187a1 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/test/src/lib.rs:492:39 [INFO] [stdout] 34: 0x5618ea19f2c2 - test::run_test::run_test_inner::{{closure}}::hc697b214abd32bc6 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/test/src/lib.rs:519:37 [INFO] [stdout] 35: 0x5618ea19f2c2 - std::sys_common::backtrace::__rust_begin_short_backtrace::h64de0d3f894854a9 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 36: 0x5618ea1a2f18 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h1fd98fc86e533ece [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/thread/mod.rs:476:17 [INFO] [stdout] 37: 0x5618ea1a2f18 - as core::ops::function::FnOnce<()>>::call_once::h4e2a7abf702e4cfd [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panic.rs:347:9 [INFO] [stdout] 38: 0x5618ea1a2f18 - std::panicking::try::do_call::h4496392321a3c8c0 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:401:40 [INFO] [stdout] 39: 0x5618ea1a2f18 - std::panicking::try::hf1e14258e04e8e9a [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:365:19 [INFO] [stdout] 40: 0x5618ea1a2f18 - std::panic::catch_unwind::hb72c3777cd55642f [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panic.rs:434:14 [INFO] [stdout] 41: 0x5618ea1a2f18 - std::thread::Builder::spawn_unchecked::{{closure}}::h2d7915a5910e148e [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/thread/mod.rs:475:30 [INFO] [stdout] 42: 0x5618ea1a2f18 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h83fd2f1ef5be797c [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 43: 0x5618ea2bdef7 - as core::ops::function::FnOnce>::call_once::ha8b1d5a0092467fc [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 44: 0x5618ea2bdef7 - as core::ops::function::FnOnce>::call_once::h4b9f24ec4e8a879e [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 45: 0x5618ea2bdef7 - std::sys::unix::thread::Thread::new::thread_start::h2a0e98fbc4ab4c32 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys/unix/thread.rs:72:17 [INFO] [stdout] 46: 0x7f820ed08609 - start_thread [INFO] [stdout] 47: 0x7f820eada293 - clone [INFO] [stdout] 48: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- index::test::test_serialization stdout ---- [INFO] [stdout] thread 'index::test::test_serialization' panicked at 'internal error: entered unreachable code: This should never be called', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/ahash-0.7.2/src/fallback_hash.rs:235:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5618ea2b6960 - std::backtrace_rs::backtrace::libunwind::trace::h706b838f5bbd876b [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stdout] 1: 0x5618ea2b6960 - std::backtrace_rs::backtrace::trace_unsynchronized::hc15f29ae7822b7b8 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x5618ea2b6960 - std::sys_common::backtrace::_print_fmt::h7c580c971f91926c [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x5618ea2b6960 - ::fmt::h2a772198c4032452 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x5618ea2d936c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/fmt/mod.rs:1115:17 [INFO] [stdout] 5: 0x5618ea2b35d5 - std::io::Write::write_fmt::h583dff5009d01a9f [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/io/mod.rs:1663:15 [INFO] [stdout] 6: 0x5618ea2b8b3b - std::sys_common::backtrace::_print::h5b3c171e6f864ae4 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x5618ea2b8b3b - std::sys_common::backtrace::print::h93b9e9ed2a98e611 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x5618ea2b8b3b - std::panicking::default_hook::{{closure}}::hd8da92bb68d520c5 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:208:50 [INFO] [stdout] 9: 0x5618ea2b864c - std::panicking::default_hook::hdbc8b2951c5afbab [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:222:9 [INFO] [stdout] 10: 0x5618ea2b9204 - std::panicking::rust_panic_with_hook::h8a4c841655926f4e [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:622:17 [INFO] [stdout] 11: 0x5618ea2b8ce7 - std::panicking::begin_panic_handler::{{closure}}::h471b6bc74904b7b0 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:519:13 [INFO] [stdout] 12: 0x5618ea2b6e5c - std::sys_common::backtrace::__rust_end_short_backtrace::h309f5c707f29932f [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 13: 0x5618ea2b8c49 - rust_begin_unwind [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:515:5 [INFO] [stdout] 14: 0x5618ea0dd6c1 - core::panicking::panic_fmt::hcf5f6d96e1dd7099 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/panicking.rs:92:14 [INFO] [stdout] 15: 0x5618ea10cc26 - ::write::h8c786d2e72dce11d [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/ahash-0.7.2/src/fallback_hash.rs:235:9 [INFO] [stdout] 16: 0x5618ea0fe304 - core::hash::impls::::hash::h069d0d71a18a35c7 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/hash/mod.rs:682:13 [INFO] [stdout] 17: 0x5618ea0ff544 - ::hash::h75a49fd6467af845 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/alloc/src/string.rs:2134:9 [INFO] [stdout] 18: 0x5618ea0fe366 - core::hash::impls::::hash::hc174e0aa3a9150d8 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/hash/mod.rs:749:13 [INFO] [stdout] 19: 0x5618ea100a86 - ::hash_as_u64::hcc6cf1bc5ffde6fc [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/ahash-0.7.2/src/random_state.rs:243:9 [INFO] [stdout] 20: 0x5618ea0ebf30 - ::get_hash::h3cfaf31bbaef8453 [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/ahash-0.7.2/src/specialize.rs:67:17 [INFO] [stdout] 21: 0x5618ea12a090 - vgaligner::kmer::generate_hash::hebd2e676a955de65 [INFO] [stdout] at /opt/rustwide/workdir/src/kmer.rs:702:5 [INFO] [stdout] 22: 0x5618ea129695 - vgaligner::kmer::generate_pos_on_ref_2::h31b9c7a3c64daace [INFO] [stdout] at /opt/rustwide/workdir/src/kmer.rs:605:38 [INFO] [stdout] 23: 0x5618ea15806a - vgaligner::index::test::test_serialization::h12cb4e06ca08d6ea [INFO] [stdout] at /opt/rustwide/workdir/src/index.rs:656:13 [INFO] [stdout] 24: 0x5618ea1578ea - vgaligner::index::test::test_serialization::{{closure}}::h28ed5e8c590d356b [INFO] [stdout] at /opt/rustwide/workdir/src/index.rs:625:5 [INFO] [stdout] 25: 0x5618ea1494ce - core::ops::function::FnOnce::call_once::h4e81151e555f70f8 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 26: 0x5618ea1c7273 - core::ops::function::FnOnce::call_once::h99a97b0ff983bd25 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 27: 0x5618ea1c7273 - test::__rust_begin_short_backtrace::h8fe0d26ed1584e50 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/test/src/lib.rs:577:5 [INFO] [stdout] 28: 0x5618ea1c5d00 - as core::ops::function::FnOnce>::call_once::he6b90e352f394d8f [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 29: 0x5618ea1c5d00 - as core::ops::function::FnOnce<()>>::call_once::h1c05475e029700b8 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panic.rs:347:9 [INFO] [stdout] 30: 0x5618ea1c5d00 - std::panicking::try::do_call::he6de943476ae628a [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:401:40 [INFO] [stdout] 31: 0x5618ea1c5d00 - std::panicking::try::ha21937b8feb06f89 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:365:19 [INFO] [stdout] 32: 0x5618ea1c5d00 - std::panic::catch_unwind::ha79830b3325c9fa6 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panic.rs:434:14 [INFO] [stdout] 33: 0x5618ea1c5d00 - test::run_test_in_process::h1ab180b83ee2d5b5 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/test/src/lib.rs:600:18 [INFO] [stdout] 34: 0x5618ea1c5d00 - test::run_test::run_test_inner::{{closure}}::h8258ffe088f187a1 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/test/src/lib.rs:492:39 [INFO] [stdout] 35: 0x5618ea19f2c2 - test::run_test::run_test_inner::{{closure}}::hc697b214abd32bc6 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/test/src/lib.rs:519:37 [INFO] [stdout] 36: 0x5618ea19f2c2 - std::sys_common::backtrace::__rust_begin_short_backtrace::h64de0d3f894854a9 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 37: 0x5618ea1a2f18 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h1fd98fc86e533ece [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/thread/mod.rs:476:17 [INFO] [stdout] 38: 0x5618ea1a2f18 - as core::ops::function::FnOnce<()>>::call_once::h4e2a7abf702e4cfd [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panic.rs:347:9 [INFO] [stdout] 39: 0x5618ea1a2f18 - std::panicking::try::do_call::h4496392321a3c8c0 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:401:40 [INFO] [stdout] 40: 0x5618ea1a2f18 - std::panicking::try::hf1e14258e04e8e9a [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:365:19 [INFO] [stdout] 41: 0x5618ea1a2f18 - std::panic::catch_unwind::hb72c3777cd55642f [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panic.rs:434:14 [INFO] [stdout] 42: 0x5618ea1a2f18 - std::thread::Builder::spawn_unchecked::{{closure}}::h2d7915a5910e148e [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/thread/mod.rs:475:30 [INFO] [stdout] 43: 0x5618ea1a2f18 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h83fd2f1ef5be797c [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 44: 0x5618ea2bdef7 - as core::ops::function::FnOnce>::call_once::ha8b1d5a0092467fc [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 45: 0x5618ea2bdef7 - as core::ops::function::FnOnce>::call_once::h4b9f24ec4e8a879e [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 46: 0x5618ea2bdef7 - std::sys::unix::thread::Thread::new::thread_start::h2a0e98fbc4ab4c32 [INFO] [stdout] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys/unix/thread.rs:72:17 [INFO] [stdout] 47: 0x7f820ed08609 - start_thread [INFO] [stdout] 48: 0x7f820eada293 - clone [INFO] [stdout] 49: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] index::test::test_generate_hash [INFO] [stdout] index::test::test_serialization [INFO] [stdout] index::test::test_table [INFO] [stdout] [INFO] [stdout] test result: FAILED. 13 passed; 3 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.21s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--bin vgaligner' [INFO] running `Command { std: "docker" "inspect" "e4c94a067e970870d9c9a005c3c577aa151d08cff11505be8e9feb0759d4af02", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e4c94a067e970870d9c9a005c3c577aa151d08cff11505be8e9feb0759d4af02", kill_on_drop: false }` [INFO] [stdout] e4c94a067e970870d9c9a005c3c577aa151d08cff11505be8e9feb0759d4af02