[INFO] cloning repository https://github.com/Ebedthan/sabreur [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Ebedthan/sabreur" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FEbedthan%2Fsabreur", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FEbedthan%2Fsabreur'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 5da44fcdffcd131367ff9a58c3fd8ca7e67475ea [INFO] testing Ebedthan/sabreur against master#432e145bd5a974c5b6f4dd9b352891bd7502b69d for pr-87041 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FEbedthan%2Fsabreur" "/workspace/builds/worker-8/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Ebedthan/sabreur on toolchain 432e145bd5a974c5b6f4dd9b352891bd7502b69d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Ebedthan/sabreur [INFO] finished tweaking git repo https://github.com/Ebedthan/sabreur [INFO] tweaked toml for git repo https://github.com/Ebedthan/sabreur written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate git repo https://github.com/Ebedthan/sabreur already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 64b5dd4dc5da22504290e89af77a8f80f8816f3aacdccff3818fdbb24c5445b0 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "64b5dd4dc5da22504290e89af77a8f80f8816f3aacdccff3818fdbb24c5445b0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "64b5dd4dc5da22504290e89af77a8f80f8816f3aacdccff3818fdbb24c5445b0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "64b5dd4dc5da22504290e89af77a8f80f8816f3aacdccff3818fdbb24c5445b0", kill_on_drop: false }` [INFO] [stdout] 64b5dd4dc5da22504290e89af77a8f80f8816f3aacdccff3818fdbb24c5445b0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8b250cebdbcf6204afd7993e7714655d59406d43036c6ed5c7531a6fc28de00c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8b250cebdbcf6204afd7993e7714655d59406d43036c6ed5c7531a6fc28de00c", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.27 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling syn v1.0.73 [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling serde_derive v1.0.126 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling cc v1.0.68 [INFO] [stderr] Compiling typenum v1.13.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling anyhow v1.0.41 [INFO] [stderr] Compiling ndarray v0.14.0 [INFO] [stderr] Compiling itoa v0.4.7 [INFO] [stderr] Compiling bio v0.35.0 [INFO] [stderr] Compiling array-macro v1.0.5 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling strum v0.20.0 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling triple_accel v0.3.4 [INFO] [stderr] Compiling exitcode v1.1.2 [INFO] [stderr] Compiling matrixmultiply v0.2.4 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling terminal_size v0.1.17 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling num-rational v0.2.4 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Compiling console v0.14.1 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling flate2 v1.0.20 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling generic-array v0.13.3 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling num-complex v0.3.1 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v1.1.1 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling rand_distr v0.2.2 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling alga v0.9.3 [INFO] [stderr] Compiling bzip2 v0.4.3 [INFO] [stderr] Compiling nalgebra v0.19.0 [INFO] [stderr] Compiling indicatif v0.16.2 [INFO] [stderr] Compiling thiserror-impl v1.0.26 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling enum-map v0.6.4 [INFO] [stderr] Compiling thiserror v1.0.26 [INFO] [stderr] Compiling bgzip v0.2.1 [INFO] [stderr] Compiling niffler v2.3.2 [INFO] [stderr] Compiling bio-types v0.11.0 [INFO] [stderr] Compiling serde v1.0.126 [INFO] [stderr] Compiling statrs v0.13.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bstr v0.2.16 [INFO] [stderr] Compiling multimap v0.8.3 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling sabreur v0.5.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 54s [INFO] running `Command { std: "docker" "inspect" "8b250cebdbcf6204afd7993e7714655d59406d43036c6ed5c7531a6fc28de00c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8b250cebdbcf6204afd7993e7714655d59406d43036c6ed5c7531a6fc28de00c", kill_on_drop: false }` [INFO] [stdout] 8b250cebdbcf6204afd7993e7714655d59406d43036c6ed5c7531a6fc28de00c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 138548c07e6ea82fe3b7ab231cf5a65eaf2d82f19a53ef69c00cd64f44c57cd3 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "138548c07e6ea82fe3b7ab231cf5a65eaf2d82f19a53ef69c00cd64f44c57cd3", kill_on_drop: false }` [INFO] [stderr] Compiling serde_json v1.0.64 [INFO] [stderr] Compiling half v1.7.1 [INFO] [stderr] Compiling oorandom v11.1.3 [INFO] [stderr] Compiling remove_dir_all v0.5.3 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling itertools v0.10.1 [INFO] [stderr] Compiling walkdir v2.3.2 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling getrandom v0.2.3 [INFO] [stderr] Compiling plotters v0.3.1 [INFO] [stderr] Compiling criterion-plot v0.4.3 [INFO] [stderr] Compiling serde_cbor v0.11.1 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling crossbeam-channel v0.5.1 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling tempfile v3.2.0 [INFO] [stderr] Compiling criterion v0.3.4 [INFO] [stderr] Compiling sabreur v0.5.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 45.47s [INFO] running `Command { std: "docker" "inspect" "138548c07e6ea82fe3b7ab231cf5a65eaf2d82f19a53ef69c00cd64f44c57cd3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "138548c07e6ea82fe3b7ab231cf5a65eaf2d82f19a53ef69c00cd64f44c57cd3", kill_on_drop: false }` [INFO] [stdout] 138548c07e6ea82fe3b7ab231cf5a65eaf2d82f19a53ef69c00cd64f44c57cd3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 498f98e11226f00a96bb9781f330a96b6b230b68b53a559334c5df44b4b5d81b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "498f98e11226f00a96bb9781f330a96b6b230b68b53a559334c5df44b4b5d81b", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/sabreur-a5921666b7559037) [INFO] [stdout] [INFO] [stdout] running 22 tests [INFO] [stdout] test utils::tests::test_bc_cmp_mismatch_not_ok ... ok [INFO] [stdout] test utils::tests::test_bc_cmp_not_ok ... ok [INFO] [stdout] test utils::tests::test_bc_cmp_ok ... ok [INFO] [stdout] test utils::tests::test_bc_cmp_mismatch_ok ... ok [INFO] [stdout] test utils::tests::test_create_relpath_from ... ok [INFO] [stdout] test utils::tests::test_get_file_type ... ok [INFO] [stdout] test utils::tests::test_se_fa_demux_trim ... ok [INFO] [stdout] test utils::tests::test_se_fa_demux ... ok [INFO] [stdout] test utils::tests::test_read_file_content_is_ok ... ok [INFO] [stdout] test utils::tests::test_se_fa_demux_m1 ... ok [INFO] [stdout] test utils::tests::test_to_niffler_format ... ok [INFO] [stdout] test utils::tests::test_se_fa_demux_m2 ... ok [INFO] [stdout] test utils::tests::test_to_niffler_level ... ok [INFO] [stdout] test utils::tests::test_to_compression_ext ... ok [INFO] [stdout] test utils::tests::test_write_to_fa_is_ok ... ok [INFO] [stdout] test utils::tests::test_split_by_tab ... ok [INFO] [stdout] test utils::tests::test_write_to_fq_is_ok ... ok [INFO] [stdout] test utils::tests::test_se_fq_demux ... ok [INFO] [stdout] test utils::tests::test_se_fq_demux_m2 ... ok [INFO] [stdout] test utils::tests::test_read_file ... ok [INFO] [stdout] test utils::tests::test_se_fq_demux_m1 ... ok [INFO] [stdout] test utils::tests::test_split_by_tab_not_ok - should panic ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 22 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.10s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "498f98e11226f00a96bb9781f330a96b6b230b68b53a559334c5df44b4b5d81b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "498f98e11226f00a96bb9781f330a96b6b230b68b53a559334c5df44b4b5d81b", kill_on_drop: false }` [INFO] [stdout] 498f98e11226f00a96bb9781f330a96b6b230b68b53a559334c5df44b4b5d81b