[INFO] cloning repository https://github.com/Arkanosis/bamrescue
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Arkanosis/bamrescue" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FArkanosis%2Fbamrescue", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FArkanosis%2Fbamrescue'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 153a6179597bbaf1868d9f1686db6d27583fd6e0
[INFO] testing Arkanosis/bamrescue against master#432e145bd5a974c5b6f4dd9b352891bd7502b69d for pr-87041
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FArkanosis%2Fbamrescue" "/workspace/builds/worker-5/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Arkanosis/bamrescue on toolchain 432e145bd5a974c5b6f4dd9b352891bd7502b69d
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Arkanosis/bamrescue
[INFO] finished tweaking git repo https://github.com/Arkanosis/bamrescue
[INFO] tweaked toml for git repo https://github.com/Arkanosis/bamrescue written to /workspace/builds/worker-5/source/Cargo.toml
[INFO] crate git repo https://github.com/Arkanosis/bamrescue already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 9754b17a58ca11e8398a3b0dcf13b1ce34915420bef0b303aa7e0dfebd363771
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "9754b17a58ca11e8398a3b0dcf13b1ce34915420bef0b303aa7e0dfebd363771", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9754b17a58ca11e8398a3b0dcf13b1ce34915420bef0b303aa7e0dfebd363771", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9754b17a58ca11e8398a3b0dcf13b1ce34915420bef0b303aa7e0dfebd363771", kill_on_drop: false }`
[INFO] [stdout] 9754b17a58ca11e8398a3b0dcf13b1ce34915420bef0b303aa7e0dfebd363771
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 8fe871f24459832425694ed6a836b5af31fd6a1cb7c5ad78c132bad0ed61cc55
[INFO] running `Command { std: "docker" "start" "-a" "8fe871f24459832425694ed6a836b5af31fd6a1cb7c5ad78c132bad0ed61cc55", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.91
[INFO] [stderr]    Compiling syn v1.0.64
[INFO] [stderr]    Compiling regex-syntax v0.6.23
[INFO] [stderr]    Compiling serde v1.0.125
[INFO] [stderr]    Compiling build_const v0.2.1
[INFO] [stderr]    Compiling number_prefix v0.3.0
[INFO] [stderr]    Compiling futures v0.1.31
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling crc v1.8.1
[INFO] [stderr]    Compiling terminal_size v0.1.16
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling futures-cpupool v0.1.8
[INFO] [stderr]    Compiling regex v1.4.5
[INFO] [stderr]    Compiling console v0.14.1
[INFO] [stderr]    Compiling serde_derive v1.0.125
[INFO] [stderr]    Compiling indicatif v0.15.0
[INFO] [stderr]    Compiling docopt v1.1.1
[INFO] [stderr]    Compiling bamrescue v0.3.0-dev (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 30.75s
[INFO] running `Command { std: "docker" "inspect" "8fe871f24459832425694ed6a836b5af31fd6a1cb7c5ad78c132bad0ed61cc55", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8fe871f24459832425694ed6a836b5af31fd6a1cb7c5ad78c132bad0ed61cc55", kill_on_drop: false }`
[INFO] [stdout] 8fe871f24459832425694ed6a836b5af31fd6a1cb7c5ad78c132bad0ed61cc55
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f51f6267a51d436f97993743da1e933414df93a501ed319e696e62cce01ba1d1
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "f51f6267a51d436f97993743da1e933414df93a501ed319e696e62cce01ba1d1", kill_on_drop: false }`
[INFO] [stderr]    Compiling bamrescue v0.3.0-dev (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 2.06s
[INFO] running `Command { std: "docker" "inspect" "f51f6267a51d436f97993743da1e933414df93a501ed319e696e62cce01ba1d1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f51f6267a51d436f97993743da1e933414df93a501ed319e696e62cce01ba1d1", kill_on_drop: false }`
[INFO] [stdout] f51f6267a51d436f97993743da1e933414df93a501ed319e696e62cce01ba1d1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 9ef6a779be349ccb1ad2afa57c7e4c71a0479aea1e836a4c6d11ed560dee6922
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "9ef6a779be349ccb1ad2afa57c7e4c71a0479aea1e836a4c6d11ed560dee6922", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 53.51s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/bamrescue-8eaa68ae2174a097)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/bamrescue-8e27f0af5fe398f8)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/check.rs (/opt/rustwide/target/debug/deps/check-8409f85041de5738)
[INFO] [stdout] 
[INFO] [stdout] running 26 tests
[INFO] [stdout] test single_block_missing_gzip_identifier ... ok
[INFO] [stdout] test single_block_missing_bgzf_identifier ... ok
[INFO] [stdout] test empty_file ... ok
[INFO] [stdout] test three_blocks_bam ... ok
[INFO] [stdout] test empty_with_extra_similar_subfields_before_and_after_bam ... ok
[INFO] [stdout] test single_block_missing_empty_bam ... ok
[INFO] [stdout] test empty_with_extra_similar_subfields_before_bam ... ok
[INFO] [stdout] test single_block_bam ... ok
[INFO] [stdout] test empty_with_extra_similar_subfields_after_bam ... ok
[INFO] [stdout] test empty_bam ... ok
[INFO] [stdout] test three_blocks_too_small_bgzf_size_bam ... ok
[INFO] [stdout] test three_blocks_empty_inside_bam ... ok
[INFO] [stdout] test three_blocks_too_large_bgzf_size_bam ... ok
[INFO] [stdout] test empty_with_extra_subfields_before_bam ... ok
[INFO] [stdout] test three_blocks_with_extra_subfields_before_bam ... ok
[INFO] [stdout] test three_blocks_with_extra_subfields_after_bam ... ok
[INFO] [stdout] test empty_with_extra_subfields_before_and_after_bam ... ok
[INFO] [stdout] test three_blocks_bad_inflated_payload_crc32_bam ... ok
[INFO] [stdout] test three_blocks_with_extra_similar_subfields_before_bam ... ok
[INFO] [stdout] test three_blocks_bad_inflated_payload_size_bam ... ok
[INFO] [stdout] test two_blocks_missing_empty_bam ... ok
[INFO] [stdout] test three_blocks_with_extra_subfields_before_and_after_bam ... ok
[INFO] [stdout] test empty_with_extra_subfields_after_bam ... ok
[INFO] [stdout] test three_blocks_with_extra_similar_subfields_before_and_after_bam ... ok
[INFO] [stdout] test three_blocks_with_extra_similar_subfields_after_bam ... ok
[INFO] [stdout] test two_blocks_bam ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 26 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/common.rs (/opt/rustwide/target/debug/deps/common-e35c9ec5158f7810)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/rescue.rs (/opt/rustwide/target/debug/deps/rescue-83a86a17395cff77)
[INFO] [stdout] 
[INFO] [stdout] running 26 tests
[INFO] [stdout] test empty_file ... ok
[INFO] [stdout] test empty_with_extra_similar_subfields_after_bam ... ok
[INFO] [stdout] test empty_bam ... ok
[INFO] [stdout] test empty_with_extra_subfields_before_and_after_bam ... ok
[INFO] [stdout] test empty_with_extra_similar_subfields_before_and_after_bam ... ok
[INFO] [stdout] test single_block_bam ... ok
[INFO] [stdout] test three_blocks_bam ... ok
[INFO] [stdout] test empty_with_extra_subfields_before_bam ... ok
[INFO] [stdout] test three_blocks_too_large_bgzf_size_bam ... ok
[INFO] [stdout] test empty_with_extra_similar_subfields_before_bam ... ok
[INFO] [stdout] test single_block_missing_bgzf_identifier ... ok
[INFO] [stdout] test three_blocks_too_small_bgzf_size_bam ... ok
[INFO] [stdout] test single_block_missing_gzip_identifier ... ok
[INFO] [stdout] test three_blocks_with_extra_similar_subfields_before_bam ... ok
[INFO] [stdout] test three_blocks_with_extra_similar_subfields_before_and_after_bam ... ok
[INFO] [stdout] test three_blocks_bad_inflated_payload_crc32_bam ... ok
[INFO] [stdout] test empty_with_extra_subfields_after_bam ... ok
[INFO] [stdout] test single_block_missing_empty_bam ... ok
[INFO] [stdout] test three_blocks_empty_inside_bam ... ok
[INFO] [stdout] test three_blocks_bad_inflated_payload_size_bam ... ok
[INFO] [stdout] test three_blocks_with_extra_subfields_before_bam ... ok
[INFO] [stdout] test three_blocks_with_extra_subfields_after_bam ... ok
[INFO] [stdout] test three_blocks_with_extra_similar_subfields_after_bam ... ok
[INFO] [stdout] test three_blocks_with_extra_subfields_before_and_after_bam ... ok
[INFO] [stdout] test two_blocks_bam ... ok
[INFO] [stdout] test two_blocks_missing_empty_bam ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 26 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/version.rs (/opt/rustwide/target/debug/deps/version-5344e11fa3a7f722)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stderr]    Doc-tests bamrescue
[INFO] [stdout] test version ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "9ef6a779be349ccb1ad2afa57c7e4c71a0479aea1e836a4c6d11ed560dee6922", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9ef6a779be349ccb1ad2afa57c7e4c71a0479aea1e836a4c6d11ed560dee6922", kill_on_drop: false }`
[INFO] [stdout] 9ef6a779be349ccb1ad2afa57c7e4c71a0479aea1e836a4c6d11ed560dee6922