[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 15f07e7e103cd4bd5474c7098c2c3d7a72ede2bd [INFO] testing 38/pyd4 against master#432e145bd5a974c5b6f4dd9b352891bd7502b69d for pr-87041 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-10/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-10/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain 432e145bd5a974c5b6f4dd9b352891bd7502b69d [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-10/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 539a6516d8a3b3df26387f2ee48f96d8fc2e921e83d96e47c1d904a4453493bd [INFO] running `Command { std: "docker" "start" "-a" "539a6516d8a3b3df26387f2ee48f96d8fc2e921e83d96e47c1d904a4453493bd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "539a6516d8a3b3df26387f2ee48f96d8fc2e921e83d96e47c1d904a4453493bd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "539a6516d8a3b3df26387f2ee48f96d8fc2e921e83d96e47c1d904a4453493bd", kill_on_drop: false }` [INFO] [stdout] 539a6516d8a3b3df26387f2ee48f96d8fc2e921e83d96e47c1d904a4453493bd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cc1c7f66c40b8e7e8a665640a355f86270bcfd0dd8c371439addc22337dc465a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "cc1c7f66c40b8e7e8a665640a355f86270bcfd0dd8c371439addc22337dc465a", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.77 [INFO] [stderr] Compiling proc-macro2 v1.0.21 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling syn v1.0.41 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling serde v1.0.116 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling inventory v0.1.9 [INFO] [stderr] Compiling unindent v0.1.6 [INFO] [stderr] Compiling pyo3 v0.12.1 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling instant v0.1.7 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling clang-sys v1.0.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling miniz_oxide v0.4.2 [INFO] [stderr] Compiling rayon v1.4.0 [INFO] [stderr] Compiling lock_api v0.4.1 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling crossbeam-channel v0.4.4 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling crossbeam-deque v0.7.3 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling memmap v0.7.0 [INFO] [stderr] Compiling flate2 v1.0.17 [INFO] [stderr] Compiling parking_lot_core v0.8.0 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rayon-core v1.8.1 [INFO] [stderr] Compiling parking_lot v0.11.0 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling d4-framefile v0.1.13 [INFO] [stderr] Compiling serde_json v1.0.57 [INFO] [stderr] Compiling pyo3-derive-backend v0.12.1 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling inventory-impl v0.1.9 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling ctor v0.1.15 [INFO] [stderr] Compiling serde_derive v1.0.116 [INFO] [stderr] Compiling pyo3cls v0.12.1 [INFO] [stderr] Compiling indoc v0.3.6 [INFO] [stderr] Compiling d4-hts v0.1.13 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.13` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-2056b2fe95fb3936/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-a358ee6f2bc6ddb2/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-a358ee6f2bc6ddb2/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55dece374ce0 - std::backtrace_rs::backtrace::libunwind::trace::h706b838f5bbd876b [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55dece374ce0 - std::backtrace_rs::backtrace::trace_unsynchronized::hc15f29ae7822b7b8 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55dece374ce0 - std::sys_common::backtrace::_print_fmt::h7c580c971f91926c [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55dece374ce0 - ::fmt::h2a772198c4032452 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55dece399b4c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/fmt/mod.rs:1115:17 [INFO] [stderr] 5: 0x55dece371a75 - std::io::Write::write_fmt::h00f38d9eb2c32e02 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/io/mod.rs:1663:15 [INFO] [stderr] 6: 0x55dece37719b - std::sys_common::backtrace::_print::h5b3c171e6f864ae4 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55dece37719b - std::sys_common::backtrace::print::h93b9e9ed2a98e611 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55dece37719b - std::panicking::default_hook::{{closure}}::hd8da92bb68d520c5 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55dece376c71 - std::panicking::default_hook::hdbc8b2951c5afbab [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55dece377864 - std::panicking::rust_panic_with_hook::h8a4c841655926f4e [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x55dece377317 - std::panicking::begin_panic_handler::{{closure}}::h471b6bc74904b7b0 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:517:13 [INFO] [stderr] 12: 0x55dece3751dc - std::sys_common::backtrace::__rust_end_short_backtrace::h309f5c707f29932f [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55dece3772a9 - rust_begin_unwind [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:515:5 [INFO] [stderr] 14: 0x55decde23951 - core::panicking::panic_fmt::hcf5f6d96e1dd7099 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x55decde2389d - core::panicking::panic::hd695e3b1d0dd4ef4 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x55decde24a9d - build_script_build::build_own_htslib::h9a9c003bd759dee5 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] 17: 0x55decde24efe - build_script_build::main::h51509c7d4ff889b8 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:66:9 [INFO] [stderr] 18: 0x55decde265db - core::ops::function::FnOnce::call_once::h2dd6e09673c882e5 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x55decde25d1e - std::sys_common::backtrace::__rust_begin_short_backtrace::hcd5023912a32bc31 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x55decde26531 - std::rt::lang_start::{{closure}}::h6b373d29da3cc59b [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/rt.rs:63:18 [INFO] [stderr] 21: 0x55dece377e6a - core::ops::function::impls:: for &F>::call_once::hcbe5785d54a49ce2 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x55dece377e6a - std::panicking::try::do_call::h1c15e7ee8563c29d [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:401:40 [INFO] [stderr] 23: 0x55dece377e6a - std::panicking::try::hb8b07cef009cb4fc [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:365:19 [INFO] [stderr] 24: 0x55dece377e6a - std::panic::catch_unwind::h65a8efbe596bcbb1 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panic.rs:434:14 [INFO] [stderr] 25: 0x55dece377e6a - std::rt::lang_start_internal::{{closure}}::h66ded7ab0f18e9fb [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/rt.rs:45:48 [INFO] [stderr] 26: 0x55dece377e6a - std::panicking::try::do_call::h29cafa65efb3f3f3 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:401:40 [INFO] [stderr] 27: 0x55dece377e6a - std::panicking::try::h412fc5378b4dbfc4 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panicking.rs:365:19 [INFO] [stderr] 28: 0x55dece377e6a - std::panic::catch_unwind::h555def6aac5bf192 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/panic.rs:434:14 [INFO] [stderr] 29: 0x55dece377e6a - std::rt::lang_start_internal::hfff48202d7fee6e3 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/rt.rs:45:20 [INFO] [stderr] 30: 0x55decde26500 - std::rt::lang_start::h1cc6f72270ad6200 [INFO] [stderr] at /rustc/432e145bd5a974c5b6f4dd9b352891bd7502b69d/library/std/src/rt.rs:62:5 [INFO] [stderr] 31: 0x55decde2554c - main [INFO] [stderr] 32: 0x7f4033e7e0b3 - __libc_start_main [INFO] [stderr] 33: 0x55decde2414e - _start [INFO] [stderr] 34: 0x0 - [INFO] running `Command { std: "docker" "inspect" "cc1c7f66c40b8e7e8a665640a355f86270bcfd0dd8c371439addc22337dc465a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cc1c7f66c40b8e7e8a665640a355f86270bcfd0dd8c371439addc22337dc465a", kill_on_drop: false }` [INFO] [stdout] cc1c7f66c40b8e7e8a665640a355f86270bcfd0dd8c371439addc22337dc465a