[INFO] cloning repository https://github.com/10XGenomics/bamtofastq
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/bamtofastq" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 6634be1e1b93767202a1ac02399b74b213ea9ffd
[INFO] testing 10XGenomics/bamtofastq against master#432e145bd5a974c5b6f4dd9b352891bd7502b69d for pr-87041
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq" "/workspace/builds/worker-0/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/10XGenomics/bamtofastq on toolchain 432e145bd5a974c5b6f4dd9b352891bd7502b69d
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] finished tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] tweaked toml for git repo https://github.com/10XGenomics/bamtofastq written to /workspace/builds/worker-0/source/Cargo.toml
[INFO] crate git repo https://github.com/10XGenomics/bamtofastq already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 97526ccc7c0433d5f350b516823842c6d4538035018a8f7f85871457d7ad46a1
[INFO] running `Command { std: "docker" "start" "-a" "97526ccc7c0433d5f350b516823842c6d4538035018a8f7f85871457d7ad46a1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "97526ccc7c0433d5f350b516823842c6d4538035018a8f7f85871457d7ad46a1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "97526ccc7c0433d5f350b516823842c6d4538035018a8f7f85871457d7ad46a1", kill_on_drop: false }`
[INFO] [stdout] 97526ccc7c0433d5f350b516823842c6d4538035018a8f7f85871457d7ad46a1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7bc862ff9105b263fd69e9b2a0d9aa3e79830af22f6d4031120e5a41e3d8b77d
[INFO] running `Command { std: "docker" "start" "-a" "7bc862ff9105b263fd69e9b2a0d9aa3e79830af22f6d4031120e5a41e3d8b77d", kill_on_drop: false }`
[INFO] [stderr]    Compiling cc v1.0.54
[INFO] [stderr]    Compiling libc v0.2.71
[INFO] [stderr]    Compiling proc-macro2 v1.0.18
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling syn v1.0.39
[INFO] [stderr]    Compiling pkg-config v0.3.17
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling serde_derive v1.0.113
[INFO] [stderr]    Compiling serde v1.0.113
[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling bindgen v0.53.3
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling adler32 v1.1.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling gimli v0.21.0
[INFO] [stderr]    Compiling lazycell v1.2.1
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling tinyvec v0.3.3
[INFO] [stderr]    Compiling percent-encoding v2.1.0
[INFO] [stderr]    Compiling void v1.0.2
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling itoa v0.4.6
[INFO] [stderr]    Compiling termcolor v1.1.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling min-max-heap v1.3.0
[INFO] [stderr]    Compiling clang-sys v0.29.3
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling unicode-bidi v0.3.4
[INFO] [stderr]    Compiling itertools v0.8.2
[INFO] [stderr]    Compiling miniz_oxide v0.3.7
[INFO] [stderr]    Compiling crc32fast v1.2.0
[INFO] [stderr]    Compiling log v0.4.8
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling aho-corasick v0.7.10
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling unreachable v0.1.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling unicode-normalization v0.1.13
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling idna v0.2.0
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling curl-sys v0.4.31+curl-7.70.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling lz4-sys v1.9.2
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling rand v0.4.6
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling crossbeam-channel v0.4.2
[INFO] [stderr]    Compiling flate2 v1.0.14
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling os_type v2.2.0
[INFO] [stderr]    Compiling url v2.1.1
[INFO] [stderr]    Compiling tempdir v0.3.7
[INFO] [stderr]    Compiling num-traits v0.1.43
[INFO] [stderr]    Compiling addr2line v0.12.1
[INFO] [stderr]    Compiling ordered-float v0.3.0
[INFO] [stderr]    Compiling backtrace v0.3.49
[INFO] [stderr]    Compiling uuid v0.8.1
[INFO] [stderr]    Compiling tempfile v3.1.0
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]    Compiling synstructure v0.12.4
[INFO] [stderr]    Compiling snafu-derive v0.6.8
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling failure v0.1.8
[INFO] [stderr]    Compiling snafu v0.6.0
[INFO] [stderr]    Compiling hts-sys v1.10.2
[INFO] [stderr]    Compiling lz4 v1.23.2
[INFO] [stderr]    Compiling bio-types v0.6.0
[INFO] [stderr]    Compiling bstr v0.2.13
[INFO] [stderr]    Compiling bincode v1.2.1
[INFO] [stderr]    Compiling toml v0.5.6
[INFO] [stderr]    Compiling serde_bytes v0.11.5
[INFO] [stderr]    Compiling docopt v1.1.0
[INFO] [stderr]    Compiling shardio v0.7.1 (https://github.com/10XGenomics/rust-shardio.git#1f5f0e95)
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling human-panic v1.0.3
[INFO] [stderr]    Compiling rust-htslib v0.30.0
[INFO] [stderr]    Compiling bamtofastq v1.3.5 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 39s
[INFO] running `Command { std: "docker" "inspect" "7bc862ff9105b263fd69e9b2a0d9aa3e79830af22f6d4031120e5a41e3d8b77d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7bc862ff9105b263fd69e9b2a0d9aa3e79830af22f6d4031120e5a41e3d8b77d", kill_on_drop: false }`
[INFO] [stdout] 7bc862ff9105b263fd69e9b2a0d9aa3e79830af22f6d4031120e5a41e3d8b77d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5ffb1289e5867dd0a7e40148860616f24a0c2f22e135059cd8a2cff5107f3cca
[INFO] running `Command { std: "docker" "start" "-a" "5ffb1289e5867dd0a7e40148860616f24a0c2f22e135059cd8a2cff5107f3cca", kill_on_drop: false }`
[INFO] [stderr]    Compiling bamtofastq v1.3.5 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 8.27s
[INFO] running `Command { std: "docker" "inspect" "5ffb1289e5867dd0a7e40148860616f24a0c2f22e135059cd8a2cff5107f3cca", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5ffb1289e5867dd0a7e40148860616f24a0c2f22e135059cd8a2cff5107f3cca", kill_on_drop: false }`
[INFO] [stdout] 5ffb1289e5867dd0a7e40148860616f24a0c2f22e135059cd8a2cff5107f3cca
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+432e145bd5a974c5b6f4dd9b352891bd7502b69d" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 4e5f4bcc1c8ba140678c40901f5d4134f03a6b851269afba53072e3e20ec6670
[INFO] running `Command { std: "docker" "start" "-a" "4e5f4bcc1c8ba140678c40901f5d4134f03a6b851269afba53072e3e20ec6670", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.11s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/bamtofastq-99d67180482ba6c4)
[INFO] [stdout] running 7 tests
[INFO] [stdout] test tests::unpaired_record ... ok
[INFO] [stdout] test tests::wrong_header ... ok
[INFO] [stdout] test tests::bad_bam ... ok
[INFO] [stdout] test tests::test_lr21 ... ok
[INFO] [stdout] test tests::test_cr12 ... ok
[INFO] [stdout] test tests::test_lr20 ... ok
[INFO] [stdout] test tests::test_cr12_v1 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 3.44s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "4e5f4bcc1c8ba140678c40901f5d4134f03a6b851269afba53072e3e20ec6670", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4e5f4bcc1c8ba140678c40901f5d4134f03a6b851269afba53072e3e20ec6670", kill_on_drop: false }`
[INFO] [stdout] 4e5f4bcc1c8ba140678c40901f5d4134f03a6b851269afba53072e3e20ec6670