[INFO] fetching crate genome-graph 0.4.9... [INFO] testing genome-graph-0.4.9 against master#404c8471aba60c2d837fa728e7c729a0f52d5830 for pr-87041-1 [INFO] extracting crate genome-graph 0.4.9 into /workspace/builds/worker-49/source [INFO] validating manifest of crates.io crate genome-graph 0.4.9 on toolchain 404c8471aba60c2d837fa728e7c729a0f52d5830 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+404c8471aba60c2d837fa728e7c729a0f52d5830" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate genome-graph 0.4.9 [INFO] finished tweaking crates.io crate genome-graph 0.4.9 [INFO] tweaked toml for crates.io crate genome-graph 0.4.9 written to /workspace/builds/worker-49/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+404c8471aba60c2d837fa728e7c729a0f52d5830" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+404c8471aba60c2d837fa728e7c729a0f52d5830" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-49/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-49/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a429bb59b7a3b4e7270a4b4c243bb115fc561d8f62ec34ef63a0a36cabf65dfd" "/opt/rustwide/cargo-home/bin/cargo" "+404c8471aba60c2d837fa728e7c729a0f52d5830" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 981d35b322bba5bc47dc97656b314337d234471c0c5a7f4a40022834b1ffbd7a [INFO] running `Command { std: "docker" "start" "-a" "981d35b322bba5bc47dc97656b314337d234471c0c5a7f4a40022834b1ffbd7a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "981d35b322bba5bc47dc97656b314337d234471c0c5a7f4a40022834b1ffbd7a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "981d35b322bba5bc47dc97656b314337d234471c0c5a7f4a40022834b1ffbd7a", kill_on_drop: false }` [INFO] [stdout] 981d35b322bba5bc47dc97656b314337d234471c0c5a7f4a40022834b1ffbd7a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-49/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-49/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a429bb59b7a3b4e7270a4b4c243bb115fc561d8f62ec34ef63a0a36cabf65dfd" "/opt/rustwide/cargo-home/bin/cargo" "+404c8471aba60c2d837fa728e7c729a0f52d5830" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 51505500d706c2d028388792d8217f1250fe60fc90e82270af0b35e5411b440e [INFO] running `Command { std: "docker" "start" "-a" "51505500d706c2d028388792d8217f1250fe60fc90e82270af0b35e5411b440e", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.34 [INFO] [stderr] Compiling syn v1.0.82 [INFO] [stderr] Compiling libc v0.2.112 [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Compiling serde_derive v1.0.131 [INFO] [stderr] Compiling serde v1.0.131 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling rustversion v1.0.6 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling paste v1.0.6 [INFO] [stderr] Compiling radium v0.6.2 [INFO] [stderr] Compiling ref-cast v1.0.6 [INFO] [stderr] Compiling gimli v0.26.1 [INFO] [stderr] Compiling tap v1.0.1 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling traitsequence v0.4.2 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling strum v0.15.0 [INFO] [stderr] Compiling rustc-demangle v0.1.21 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling funty v1.2.0 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling bio v0.37.1 [INFO] [stderr] Compiling bitvector v0.1.5 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling opaque_typedef v0.0.5 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling strum v0.21.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-rational v0.4.0 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling backtrace v0.3.63 [INFO] [stderr] Compiling error-chain v0.12.4 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling itertools v0.10.3 [INFO] [stderr] Compiling matrixmultiply v0.3.2 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling object v0.27.1 [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling wyz v0.4.0 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling bitvec v0.22.3 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling quote v1.0.10 [INFO] [stderr] Compiling getrandom v0.2.3 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling rand v0.8.4 [INFO] [stderr] Compiling num-complex v0.4.0 [INFO] [stderr] Compiling approx v0.5.0 [INFO] [stderr] Compiling ordered-float v1.1.1 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling addr2line v0.17.0 [INFO] [stderr] Compiling simba v0.5.1 [INFO] [stderr] Compiling ndarray v0.15.4 [INFO] [stderr] Compiling traitgraph v0.4.10 [INFO] [stderr] Compiling rand_distr v0.4.2 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling thiserror-impl v1.0.30 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling strum_macros v0.23.1 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling ref-cast-impl v1.0.6 [INFO] [stderr] Compiling strum_macros v0.21.1 [INFO] [stderr] Compiling getset v0.1.2 [INFO] [stderr] Compiling strum_macros v0.15.0 [INFO] [stderr] Compiling enum-map v1.1.1 [INFO] [stderr] Compiling compact-genome v0.4.10 [INFO] [stderr] Compiling nalgebra v0.27.1 [INFO] [stderr] Compiling thiserror v1.0.30 [INFO] [stderr] Compiling bio-types v0.12.1 [INFO] [stderr] Compiling opaque_typedef_macros v0.0.5 [INFO] [stderr] Compiling bigraph v0.4.5 [INFO] [stderr] Compiling statrs v0.15.0 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling multimap v0.8.3 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling genome-graph v0.4.9 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 20s [INFO] running `Command { std: "docker" "inspect" "51505500d706c2d028388792d8217f1250fe60fc90e82270af0b35e5411b440e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "51505500d706c2d028388792d8217f1250fe60fc90e82270af0b35e5411b440e", kill_on_drop: false }` [INFO] [stdout] 51505500d706c2d028388792d8217f1250fe60fc90e82270af0b35e5411b440e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-49/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-49/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a429bb59b7a3b4e7270a4b4c243bb115fc561d8f62ec34ef63a0a36cabf65dfd" "/opt/rustwide/cargo-home/bin/cargo" "+404c8471aba60c2d837fa728e7c729a0f52d5830" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 91c516fd6958e5b07d4a6e2fb6c1ab36a2d2f4ade01e4618c9e8184d9994b134 [INFO] running `Command { std: "docker" "start" "-a" "91c516fd6958e5b07d4a6e2fb6c1ab36a2d2f4ade01e4618c9e8184d9994b134", kill_on_drop: false }` [INFO] [stderr] Compiling genome-graph v0.4.9 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 20.15s [INFO] running `Command { std: "docker" "inspect" "91c516fd6958e5b07d4a6e2fb6c1ab36a2d2f4ade01e4618c9e8184d9994b134", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "91c516fd6958e5b07d4a6e2fb6c1ab36a2d2f4ade01e4618c9e8184d9994b134", kill_on_drop: false }` [INFO] [stdout] 91c516fd6958e5b07d4a6e2fb6c1ab36a2d2f4ade01e4618c9e8184d9994b134 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-49/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-49/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a429bb59b7a3b4e7270a4b4c243bb115fc561d8f62ec34ef63a0a36cabf65dfd" "/opt/rustwide/cargo-home/bin/cargo" "+404c8471aba60c2d837fa728e7c729a0f52d5830" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 2b848947585de593b7e1653365d40558a183e0f8c73ec8cb9f742549178362ad [INFO] running `Command { std: "docker" "start" "-a" "2b848947585de593b7e1653365d40558a183e0f8c73ec8cb9f742549178362ad", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.23s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/genome_graph-2807fa410d37be8d) [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test io::bcalm2::tests::test_edge_read_write ... ok [INFO] [stdout] test io::bcalm2::tests::test_edge_read_write_plus_minus_and_minus_plus_loop ... ok [INFO] [stdout] test io::bcalm2::tests::test_edge_read_write_forward_merge ... ok [INFO] [stdout] test io::bcalm2::tests::test_edge_read_write_minus_plus_loop ... ok [INFO] [stdout] test io::bcalm2::tests::test_edge_read_write_self_loops ... ok [INFO] [stdout] test io::bcalm2::tests::test_edge_read_write_all_loops ... ok [INFO] [stdout] test io::bcalm2::tests::test_node_read_write ... ok [INFO] [stdout] test io::bcalm2::tests::test_edge_read_write_multigraph ... ok [INFO] [stdout] test io::bcalm2::tests::test_edge_read_write_plus_minus_loop ... ok [INFO] [stdout] test io::gfa::tests::test_read_gfa_as_edge_centric_bigraph_simple ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Doc-tests genome-graph [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "2b848947585de593b7e1653365d40558a183e0f8c73ec8cb9f742549178362ad", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2b848947585de593b7e1653365d40558a183e0f8c73ec8cb9f742549178362ad", kill_on_drop: false }` [INFO] [stdout] 2b848947585de593b7e1653365d40558a183e0f8c73ec8cb9f742549178362ad