[INFO] cloning repository https://github.com/esrice/trio_binning
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/esrice/trio_binning" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fesrice%2Ftrio_binning", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fesrice%2Ftrio_binning'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 0f674be996a581ead6a69ae59013896b8710c0fd
[INFO] testing esrice/trio_binning against master#404c8471aba60c2d837fa728e7c729a0f52d5830 for pr-87041-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fesrice%2Ftrio_binning" "/workspace/builds/worker-116/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-116/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/esrice/trio_binning on toolchain 404c8471aba60c2d837fa728e7c729a0f52d5830
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+404c8471aba60c2d837fa728e7c729a0f52d5830" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/esrice/trio_binning
[INFO] finished tweaking git repo https://github.com/esrice/trio_binning
[INFO] tweaked toml for git repo https://github.com/esrice/trio_binning written to /workspace/builds/worker-116/source/Cargo.toml
[INFO] crate git repo https://github.com/esrice/trio_binning already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+404c8471aba60c2d837fa728e7c729a0f52d5830" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a429bb59b7a3b4e7270a4b4c243bb115fc561d8f62ec34ef63a0a36cabf65dfd" "/opt/rustwide/cargo-home/bin/cargo" "+404c8471aba60c2d837fa728e7c729a0f52d5830" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] acb93836bfe6dc63b3e63dccc8ff129c4a3d3367022d62b99b3f8fcdcb2d7bfd
[INFO] running `Command { std: "docker" "start" "-a" "acb93836bfe6dc63b3e63dccc8ff129c4a3d3367022d62b99b3f8fcdcb2d7bfd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "acb93836bfe6dc63b3e63dccc8ff129c4a3d3367022d62b99b3f8fcdcb2d7bfd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "acb93836bfe6dc63b3e63dccc8ff129c4a3d3367022d62b99b3f8fcdcb2d7bfd", kill_on_drop: false }`
[INFO] [stdout] acb93836bfe6dc63b3e63dccc8ff129c4a3d3367022d62b99b3f8fcdcb2d7bfd
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a429bb59b7a3b4e7270a4b4c243bb115fc561d8f62ec34ef63a0a36cabf65dfd" "/opt/rustwide/cargo-home/bin/cargo" "+404c8471aba60c2d837fa728e7c729a0f52d5830" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fc2f56b84b293f4c015e66ebd2b24072fe6e1e36ef0b5627870d96f50e40399b
[INFO] running `Command { std: "docker" "start" "-a" "fc2f56b84b293f4c015e66ebd2b24072fe6e1e36ef0b5627870d96f50e40399b", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libc v0.2.71
[INFO] [stderr]    Compiling cc v1.0.18
[INFO] [stderr]    Compiling version_check v0.1.4
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling ucd-util v0.1.1
[INFO] [stderr]    Compiling proc-macro2 v0.4.13
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]    Compiling pkg-config v0.3.14
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling regex v1.0.2
[INFO] [stderr]    Compiling quick-error v1.2.2
[INFO] [stderr]    Compiling utf8-ranges v1.0.0
[INFO] [stderr]    Compiling scopeguard v0.3.3
[INFO] [stderr]    Compiling unicode-width v0.1.5
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling nodrop v0.1.12
[INFO] [stderr]    Compiling stable_deref_trait v1.1.1
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling memoffset v0.2.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling bitflags v1.0.3
[INFO] [stderr]    Compiling strsim v0.7.0
[INFO] [stderr]    Compiling termcolor v1.0.1
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling serde v1.0.72
[INFO] [stderr]    Compiling crossbeam-utils v0.5.0
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling matches v0.1.8
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[INFO] [stderr]    Compiling unicode-normalization v0.1.7
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[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling ieee754 v0.2.2
[INFO] [stderr]    Compiling bitflags v0.9.1
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling scoped_threadpool v0.1.9
[INFO] [stderr]    Compiling itertools v0.6.5
[INFO] [stderr]    Compiling owning_ref v0.3.3
[INFO] [stderr]    Compiling humantime v1.1.1
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]    Compiling log v0.4.4
[INFO] [stderr]    Compiling crc32fast v1.2.0
[INFO] [stderr]    Compiling proc-macro2 v0.3.5
[INFO] [stderr]    Compiling miniz_oxide v0.3.6
[INFO] [stderr]    Compiling regex-syntax v0.6.2
[INFO] [stderr]    Compiling regex-syntax v0.5.6
[INFO] [stderr]    Compiling unicode-bidi v0.3.4
[INFO] [stderr]    Compiling arrayvec v0.4.7
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling lazy_static v1.1.0
[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]    Compiling libloading v0.5.0
[INFO] [stderr]    Compiling lzma-sys v0.1.11
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling bzip2-sys v0.1.6 (https://github.com/alexcrichton/bzip2-rs.git#54aef435)
[INFO] [stderr]    Compiling lock_api v0.1.3
[INFO] [stderr]    Compiling smallvec v0.6.13
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling idna v0.1.5
[INFO] [stderr]    Compiling quote v0.6.8
[INFO] [stderr]    Compiling memchr v2.0.1
[INFO] [stderr]    Compiling term_size v0.3.1
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling rand v0.4.3
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]    Compiling rand v0.5.5
[INFO] [stderr]    Compiling slice-deque v0.1.11
[INFO] [stderr]    Compiling flate2 v1.0.14
[INFO] [stderr]    Compiling quote v0.5.2
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling crossbeam-epoch v0.5.2
[INFO] [stderr]    Compiling syn v0.14.9
[INFO] [stderr]    Compiling textwrap v0.10.0
[INFO] [stderr]    Compiling aho-corasick v0.6.6
[INFO] [stderr]    Compiling clap v2.32.0
[INFO] [stderr]    Compiling url v1.7.1
[INFO] [stderr]    Compiling crossbeam-deque v0.5.2
[INFO] [stderr]    Compiling buf_redux v0.7.1
[INFO] [stderr]    Compiling parking_lot_core v0.2.14
[INFO] [stderr]    Compiling parking_lot v0.6.3
[INFO] [stderr]    Compiling crossbeam-channel v0.2.4
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]    Compiling crossbeam v0.4.1
[INFO] [stderr]    Compiling env_logger v0.5.12
[INFO] [stderr]    Compiling serde_derive v1.0.72
[INFO] [stderr]    Compiling bio-types v0.2.0
[INFO] [stderr]    Compiling seq_io v0.3.0
[INFO] [stderr]    Compiling rust-htslib v0.21.1-alpha.0 (https://github.com/rust-bio/rust-htslib.git?rev=1f9736e#1f9736ef)
[INFO] [stderr]    Compiling trio_binning v0.2.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 25s
[INFO] running `Command { std: "docker" "inspect" "fc2f56b84b293f4c015e66ebd2b24072fe6e1e36ef0b5627870d96f50e40399b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fc2f56b84b293f4c015e66ebd2b24072fe6e1e36ef0b5627870d96f50e40399b", kill_on_drop: false }`
[INFO] [stdout] fc2f56b84b293f4c015e66ebd2b24072fe6e1e36ef0b5627870d96f50e40399b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a429bb59b7a3b4e7270a4b4c243bb115fc561d8f62ec34ef63a0a36cabf65dfd" "/opt/rustwide/cargo-home/bin/cargo" "+404c8471aba60c2d837fa728e7c729a0f52d5830" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5e73ed9b1e38c38b15414a9bb13e9cf9440e33da6dbc4723956e308162d9083c
[INFO] running `Command { std: "docker" "start" "-a" "5e73ed9b1e38c38b15414a9bb13e9cf9440e33da6dbc4723956e308162d9083c", kill_on_drop: false }`
[INFO] [stderr]    Compiling trio_binning v0.2.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 2.25s
[INFO] running `Command { std: "docker" "inspect" "5e73ed9b1e38c38b15414a9bb13e9cf9440e33da6dbc4723956e308162d9083c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5e73ed9b1e38c38b15414a9bb13e9cf9440e33da6dbc4723956e308162d9083c", kill_on_drop: false }`
[INFO] [stdout] 5e73ed9b1e38c38b15414a9bb13e9cf9440e33da6dbc4723956e308162d9083c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-116/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a429bb59b7a3b4e7270a4b4c243bb115fc561d8f62ec34ef63a0a36cabf65dfd" "/opt/rustwide/cargo-home/bin/cargo" "+404c8471aba60c2d837fa728e7c729a0f52d5830" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 4af5408613547232dd55dc1d1e8e3cb7b30f3c5a0946703939922917cacd7adf
[INFO] running `Command { std: "docker" "start" "-a" "4af5408613547232dd55dc1d1e8e3cb7b30f3c5a0946703939922917cacd7adf", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.08s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/trio_binning-821d8f66d1111746)
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test classify::tests::test_count ... ok
[INFO] [stdout] test kmer::tests::canonical ... ok
[INFO] [stdout] test kmer::tests::bits_reversible ... ok
[INFO] [stdout] test kmer::tests::revcomp_reversible ... ok
[INFO] [stdout] test kmer::tests::invalid_canonical - should panic ... ok
[INFO] [stdout] test kmer::tests::invalid_kmer_base - should panic ... ok
[INFO] [stdout] test kmer::tests::invalid_revcomp_base - should panic ... ok
[INFO] [stdout] test kmer::tests::too_long_bits_to_kmer - should panic ... ok
[INFO] [stdout] test kmer::tests::too_long_kmer_to_bits - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/classify_by_alignment-05403fde77927159)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/classify_by_kmers-9944840865a643ac)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests trio_binning
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/classify.rs - classify::open_writer (line 159) ... ignored
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "4af5408613547232dd55dc1d1e8e3cb7b30f3c5a0946703939922917cacd7adf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4af5408613547232dd55dc1d1e8e3cb7b30f3c5a0946703939922917cacd7adf", kill_on_drop: false }`
[INFO] [stdout] 4af5408613547232dd55dc1d1e8e3cb7b30f3c5a0946703939922917cacd7adf