[INFO] fetching crate ncbitaxonomy 1.0.7... [INFO] testing ncbitaxonomy-1.0.7 against try#d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2 for pr-86479 [INFO] extracting crate ncbitaxonomy 1.0.7 into /workspace/builds/worker-0/source [INFO] validating manifest of crates.io crate ncbitaxonomy 1.0.7 on toolchain d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate ncbitaxonomy 1.0.7 [INFO] finished tweaking crates.io crate ncbitaxonomy 1.0.7 [INFO] tweaked toml for crates.io crate ncbitaxonomy 1.0.7 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate crates.io crate ncbitaxonomy 1.0.7 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded dotenv v0.9.0 [INFO] [stderr] Downloaded indextree v3.3.0 [INFO] [stderr] Downloaded slice-deque v0.1.16 [INFO] [stderr] Downloaded statrs v0.9.0 [INFO] [stderr] Downloaded buf_redux v0.7.1 [INFO] [stderr] Downloaded seq_io v0.3.0 [INFO] [stderr] Downloaded bio v0.25.0 [INFO] [stderr] Downloaded bv v0.10.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 0da826492c9b227c41f2da3ee636ddfeffeb23f1228ca95fb02b7e07a5bf1184 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "0da826492c9b227c41f2da3ee636ddfeffeb23f1228ca95fb02b7e07a5bf1184", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0da826492c9b227c41f2da3ee636ddfeffeb23f1228ca95fb02b7e07a5bf1184", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0da826492c9b227c41f2da3ee636ddfeffeb23f1228ca95fb02b7e07a5bf1184", kill_on_drop: false }` [INFO] [stdout] 0da826492c9b227c41f2da3ee636ddfeffeb23f1228ca95fb02b7e07a5bf1184 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] aab34c16a5789eb10b44f5d4dc186394e94aaf2a2dc8928489fdada5d2f99bda [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "aab34c16a5789eb10b44f5d4dc186394e94aaf2a2dc8928489fdada5d2f99bda", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.18 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling syn v1.0.31 [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Compiling serde v1.0.112 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling nodrop v0.1.14 [INFO] [stderr] Compiling stable_deref_trait v1.1.1 [INFO] [stderr] Compiling adler32 v1.1.0 [INFO] [stderr] Compiling crossbeam-utils v0.5.0 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling object v0.20.0 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling unicode-width v0.1.7 [INFO] [stderr] Compiling bit-vec v0.6.2 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling strsim v0.7.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling owning_ref v0.4.1 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling miniz_oxide v0.3.7 [INFO] [stderr] Compiling textwrap v0.10.0 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling arrayvec v0.4.12 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling parking_lot_core v0.3.1 [INFO] [stderr] Compiling smallvec v0.6.13 [INFO] [stderr] Compiling lock_api v0.1.5 [INFO] [stderr] Compiling crossbeam-epoch v0.5.2 [INFO] [stderr] Compiling crossbeam-epoch v0.6.1 [INFO] [stderr] Compiling libsqlite3-sys v0.18.0 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling crossbeam-deque v0.5.2 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling slice-deque v0.1.16 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling flate2 v1.0.14 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling buf_redux v0.7.1 [INFO] [stderr] Compiling backtrace v0.3.49 [INFO] [stderr] Compiling dotenv v0.9.0 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling parking_lot v0.6.4 [INFO] [stderr] Compiling crossbeam-channel v0.2.6 [INFO] [stderr] Compiling crossbeam v0.4.1 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Compiling serde_derive v1.0.112 [INFO] [stderr] Compiling diesel_derives v1.4.1 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling thiserror-impl v1.0.20 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling indextree v3.3.0 [INFO] [stderr] Compiling thiserror v1.0.20 [INFO] [stderr] Compiling diesel v1.4.5 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling bio-types v0.6.0 [INFO] [stderr] Compiling seq_io v0.3.0 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling migrations_internals v1.4.1 [INFO] [stderr] Compiling migrations_macros v1.4.2 [INFO] [stderr] Compiling diesel_migrations v1.4.0 [INFO] [stderr] Compiling ncbitaxonomy v1.0.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 09s [INFO] running `Command { std: "docker" "inspect" "aab34c16a5789eb10b44f5d4dc186394e94aaf2a2dc8928489fdada5d2f99bda", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "aab34c16a5789eb10b44f5d4dc186394e94aaf2a2dc8928489fdada5d2f99bda", kill_on_drop: false }` [INFO] [stdout] aab34c16a5789eb10b44f5d4dc186394e94aaf2a2dc8928489fdada5d2f99bda [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3ca95007aea0baef338bf01b31f167901a4c09f1295f70bef680fb9dc4a55585 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "3ca95007aea0baef338bf01b31f167901a4c09f1295f70bef680fb9dc4a55585", kill_on_drop: false }` [INFO] [stderr] Compiling ncbitaxonomy v1.0.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 3.47s [INFO] running `Command { std: "docker" "inspect" "3ca95007aea0baef338bf01b31f167901a4c09f1295f70bef680fb9dc4a55585", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3ca95007aea0baef338bf01b31f167901a4c09f1295f70bef680fb9dc4a55585", kill_on_drop: false }` [INFO] [stdout] 3ca95007aea0baef338bf01b31f167901a4c09f1295f70bef680fb9dc4a55585 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 25109ccd84d5359d80aa71c4d310cef8ed5a57fda5696bc0ab51d51f18e506d0 [INFO] running `Command { std: "docker" "start" "-a" "25109ccd84d5359d80aa71c4d310cef8ed5a57fda5696bc0ab51d51f18e506d0", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/ncbitaxonomy-302dc2c070d08d5b) [INFO] [stdout] [INFO] [stdout] running 23 tests [INFO] [stdout] test tests::contains_id ... ok [INFO] [stdout] test tests::descendants ... ok [INFO] [stdout] test tests::get_node_by_id ... ok [INFO] [stdout] test tests::get_id_by_node ... ok [INFO] [stdout] test tests::get_lineage ... ok [INFO] [stdout] test tests::get_lineage_sqlite ... ok [INFO] [stdout] test tests::get_name_by_id ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_taxid ... ok [INFO] [stdout] test tests::sqlite_contains_id ... ok [INFO] [stdout] test tests::sqlite_contains_name ... ok [INFO] [stdout] test tests::sqlite_descendants ... ok [INFO] [stdout] test tests::sqlite_taxid_descendants ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_canonical ... ok [INFO] [stdout] test tests::traversal ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_taxid_canonical ... ok [INFO] [stdout] test tests::contains_name ... ok [INFO] [stdout] test tests::distance_to_common_ancestor_canonical ... ok [INFO] [stdout] test tests::taxid_descendants ... ok [INFO] [stdout] test tests::sqlite_get_name_by_id ... ok [INFO] [stdout] test tests::distance_to_common_ancestor ... ok [INFO] [stdout] test tests::distance_to_common_ancestor_taxid ... ok [INFO] [stdout] test tests::distance_to_common_ancestor_taxid_canonical ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 23 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.29s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/taxonomy_filter_fastq-1ce3aec520dbc9a1) [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/taxonomy_filter_refseq-7f06e75bb7e355a9) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/taxonomy_util-35192544e55f4ef5) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests ncbitaxonomy [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/lib.rs - NcbiFileTaxonomy::from_ncbi_files (line 105) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.34s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "25109ccd84d5359d80aa71c4d310cef8ed5a57fda5696bc0ab51d51f18e506d0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "25109ccd84d5359d80aa71c4d310cef8ed5a57fda5696bc0ab51d51f18e506d0", kill_on_drop: false }` [INFO] [stdout] 25109ccd84d5359d80aa71c4d310cef8ed5a57fda5696bc0ab51d51f18e506d0