[INFO] fetching crate global-supertrees 0.1.0... [INFO] testing global-supertrees-0.1.0 against try#d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2 for pr-86479 [INFO] extracting crate global-supertrees 0.1.0 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate global-supertrees 0.1.0 on toolchain d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate global-supertrees 0.1.0 [INFO] finished tweaking crates.io crate global-supertrees 0.1.0 [INFO] tweaked toml for crates.io crate global-supertrees 0.1.0 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rawpointer v0.1.0 [INFO] [stderr] Downloaded matrixmultiply v0.1.15 [INFO] [stderr] Downloaded itertools v0.7.11 [INFO] [stderr] Downloaded ndarray v0.12.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8cf75e4bf83b3eecf295102d8a1aaf17224e106ff4204537b1ffb555af9c90d8 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8cf75e4bf83b3eecf295102d8a1aaf17224e106ff4204537b1ffb555af9c90d8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8cf75e4bf83b3eecf295102d8a1aaf17224e106ff4204537b1ffb555af9c90d8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8cf75e4bf83b3eecf295102d8a1aaf17224e106ff4204537b1ffb555af9c90d8", kill_on_drop: false }` [INFO] [stdout] 8cf75e4bf83b3eecf295102d8a1aaf17224e106ff4204537b1ffb555af9c90d8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 005fb843928594d0eb0d81258cd338525e387738e87555ba458c892ae2292aeb [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "005fb843928594d0eb0d81258cd338525e387738e87555ba458c892ae2292aeb", kill_on_drop: false }` [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling libc v0.2.98 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling rayon-core v1.9.1 [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling memoffset v0.6.4 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling rayon v1.5.1 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling crossbeam-channel v0.5.1 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling global-supertrees v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:54:92 [INFO] [stdout] | [INFO] [stdout] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see issue #80165 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:61:82 [INFO] [stdout] | [INFO] [stdout] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see issue #80165 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/tree_merging.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `trees` [INFO] [stdout] --> src/main.rs:98:9 [INFO] [stdout] | [INFO] [stdout] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let distance_matrices: Vec = [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `merge_distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:102:4 [INFO] [stdout] | [INFO] [stdout] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 25.51s [INFO] running `Command { std: "docker" "inspect" "005fb843928594d0eb0d81258cd338525e387738e87555ba458c892ae2292aeb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "005fb843928594d0eb0d81258cd338525e387738e87555ba458c892ae2292aeb", kill_on_drop: false }` [INFO] [stdout] 005fb843928594d0eb0d81258cd338525e387738e87555ba458c892ae2292aeb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 0fd9860c48c71155796e3461092715e19a9cdbe077f04d126dafb8784a35b29a [INFO] running `Command { std: "docker" "start" "-a" "0fd9860c48c71155796e3461092715e19a9cdbe077f04d126dafb8784a35b29a", kill_on_drop: false }` [INFO] [stderr] Compiling global-supertrees v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:54:92 [INFO] [stdout] | [INFO] [stdout] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see issue #80165 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/utils.rs:61:82 [INFO] [stdout] | [INFO] [stdout] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stdout] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see issue #80165 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/tree_merging.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `trees` [INFO] [stdout] --> src/main.rs:98:9 [INFO] [stdout] | [INFO] [stdout] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:10:9 [INFO] [stdout] | [INFO] [stdout] 10 | let distance_matrices: Vec = [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `merge_distance_matrices` [INFO] [stdout] --> src/tree_merging.rs:102:4 [INFO] [stdout] | [INFO] [stdout] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 5.93s [INFO] running `Command { std: "docker" "inspect" "0fd9860c48c71155796e3461092715e19a9cdbe077f04d126dafb8784a35b29a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0fd9860c48c71155796e3461092715e19a9cdbe077f04d126dafb8784a35b29a", kill_on_drop: false }` [INFO] [stdout] 0fd9860c48c71155796e3461092715e19a9cdbe077f04d126dafb8784a35b29a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] e6ca7af8329a0864a759bf7dfc61819df20a3ec40ca192c739913cb8807cc635 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e6ca7af8329a0864a759bf7dfc61819df20a3ec40ca192c739913cb8807cc635", kill_on_drop: false }` [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:54:92 [INFO] [stderr] | [INFO] [stderr] 54 | pub fn cache_mapping(mapping : &BTreeMap<[u8; 10], u32>, path : &String) -> Result<(), Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see issue #80165 [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:61:82 [INFO] [stderr] | [INFO] [stderr] 61 | pub fn load_cache_mapping(path : &String) -> Result, Box> { [INFO] [stderr] | ^^^^^ help: use `dyn`: `dyn Error` [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see issue #80165 [INFO] [stderr] [INFO] [stderr] warning: unused import: `rayon::prelude` [INFO] [stderr] --> src/tree_merging.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use rayon::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `trees` [INFO] [stderr] --> src/main.rs:98:9 [INFO] [stderr] | [INFO] [stderr] 98 | let trees : Vec = distance_matrices.par_iter().map(| dm | dm.neighbour_joining()).collect(); [INFO] [stderr] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trees` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `distance_matrices` [INFO] [stderr] --> src/tree_merging.rs:10:9 [INFO] [stderr] | [INFO] [stderr] 10 | let distance_matrices: Vec = [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_distance_matrices` [INFO] [stderr] [INFO] [stderr] warning: function is never used: `merge_distance_matrices` [INFO] [stderr] --> src/tree_merging.rs:102:4 [INFO] [stderr] | [INFO] [stderr] 102 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `global-supertrees` (bin "global-supertrees" test) generated 6 warnings [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.06s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/global_supertrees-d8eccdb22bfdf0af) [INFO] [stdout] running 16 tests [INFO] [stdout] test tests::tests::test_find_first_common_ancestor ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_1 ... ok [INFO] [stdout] test tests::tests::test_get_levels_from_root ... ok [INFO] [stdout] test tests::tests::test_find_first_zero ... ok [INFO] [stdout] test tests::tests::test_load_tree_file ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_2 ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_3 ... ok [INFO] [stdout] test tests::tests::test_to_dot ... ok [INFO] [stdout] test tests::tests::test_batch_id_tax_mapping ... FAILED [INFO] [stdout] test tests::tests::test_merge_organisms ... FAILED [INFO] [stdout] test tests::tests::test_to_distance_matrix_medium_nested ... ok [INFO] [stdout] test tests::tests::test_get_partial_tree ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_simple ... ok [INFO] [stdout] test tests::tests::test_to_distance_matrix_medium ... ok [INFO] [stdout] test tests::tests::test_neighbour_joining ... ok [INFO] [stdout] test tests::tests::test_tree_merging ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_batch_id_tax_mapping stdout ---- [INFO] [stdout] thread 'tests::tests::test_batch_id_tax_mapping' panicked at 'file not found: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/uniprot.rs:34:34 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x560966720d70 - std::backtrace_rs::backtrace::libunwind::trace::h99dbb39dca18857d [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stdout] 1: 0x560966720d70 - std::backtrace_rs::backtrace::trace_unsynchronized::h832861927e9cfedf [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x560966720d70 - std::sys_common::backtrace::_print_fmt::h3d18154c77dcf310 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x560966720d70 - ::fmt::he312f4ad5b9bb346 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x56096674572c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/fmt/mod.rs:1115:17 [INFO] [stdout] 5: 0x56096671d9e5 - std::io::Write::write_fmt::h65d36b96410d80d7 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/io/mod.rs:1665:15 [INFO] [stdout] 6: 0x560966722f5b - std::sys_common::backtrace::_print::h65d996766de40da4 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x560966722f5b - std::sys_common::backtrace::print::h40df9727e635f303 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x560966722f5b - std::panicking::default_hook::{{closure}}::hd2da4327dea91a51 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:208:50 [INFO] [stdout] 9: 0x560966722a6c - std::panicking::default_hook::h3d55120ad6ada158 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:222:9 [INFO] [stdout] 10: 0x560966723624 - std::panicking::rust_panic_with_hook::hf85dd0bb545e3b55 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:622:17 [INFO] [stdout] 11: 0x560966723107 - std::panicking::begin_panic_handler::{{closure}}::h736ae969434da9fa [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:519:13 [INFO] [stdout] 12: 0x56096672124c - std::sys_common::backtrace::__rust_end_short_backtrace::h6133bb80b1d6c3e0 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 13: 0x560966723069 - rust_begin_unwind [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:515:5 [INFO] [stdout] 14: 0x5609663e58c1 - core::panicking::panic_fmt::hcf5f6d96e1dd7099 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/panicking.rs:92:14 [INFO] [stdout] 15: 0x5609663e59b3 - core::result::unwrap_failed::he898b02f57993c42 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/result.rs:1599:5 [INFO] [stdout] 16: 0x560966420150 - core::result::Result::expect::hd7b35daaf1674cfa [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/result.rs:1241:23 [INFO] [stdout] 17: 0x56096644d908 - global_supertrees::uniprot::load_mapping_file::hefa029a670ff39bf [INFO] [stdout] at /opt/rustwide/workdir/src/uniprot.rs:34:13 [INFO] [stdout] 18: 0x560966442d2a - global_supertrees::tests::tests::test_batch_id_tax_mapping::h0d328089c9edc849 [INFO] [stdout] at /opt/rustwide/workdir/src/tests.rs:230:26 [INFO] [stdout] 19: 0x560966442bda - global_supertrees::tests::tests::test_batch_id_tax_mapping::{{closure}}::hc7dd0df95ed25f21 [INFO] [stdout] at /opt/rustwide/workdir/src/tests.rs:227:5 [INFO] [stdout] 20: 0x56096649054e - core::ops::function::FnOnce::call_once::h77ea0eb71c2a8ea7 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x5609664e41f3 - core::ops::function::FnOnce::call_once::h227fa683a5745bd3 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x5609664e41f3 - test::__rust_begin_short_backtrace::h3a193bd570ada00a [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/test/src/lib.rs:578:5 [INFO] [stdout] 23: 0x5609664e2c68 - as core::ops::function::FnOnce>::call_once::h262d2f411717179a [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 24: 0x5609664e2c68 - as core::ops::function::FnOnce<()>>::call_once::hfec00caec3e52a7b [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panic.rs:347:9 [INFO] [stdout] 25: 0x5609664e2c68 - std::panicking::try::do_call::ha5f42e76ffda569d [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:401:40 [INFO] [stdout] 26: 0x5609664e2c68 - std::panicking::try::h53f36df0935b9500 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:365:19 [INFO] [stdout] 27: 0x5609664e2c68 - std::panic::catch_unwind::h5a497f74b0ce006f [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panic.rs:434:14 [INFO] [stdout] 28: 0x5609664e2c68 - test::run_test_in_process::hab0aead337f48a88 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/test/src/lib.rs:601:18 [INFO] [stdout] 29: 0x5609664e2c68 - test::run_test::run_test_inner::{{closure}}::h632c383164d4cba2 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/test/src/lib.rs:493:39 [INFO] [stdout] 30: 0x5609664b13ed - test::run_test::run_test_inner::{{closure}}::h7c4b3612891a4b58 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/test/src/lib.rs:520:37 [INFO] [stdout] 31: 0x5609664b13ed - std::sys_common::backtrace::__rust_begin_short_backtrace::habf7d8a08419d00e [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 32: 0x5609664b5b18 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h3acba502e2068204 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/thread/mod.rs:476:17 [INFO] [stdout] 33: 0x5609664b5b18 - as core::ops::function::FnOnce<()>>::call_once::h526ef819c1964a35 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panic.rs:347:9 [INFO] [stdout] 34: 0x5609664b5b18 - std::panicking::try::do_call::hc0b5663d6373cec8 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:401:40 [INFO] [stdout] 35: 0x5609664b5b18 - std::panicking::try::ha9007ede9d35dcd6 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:365:19 [INFO] [stdout] 36: 0x5609664b5b18 - std::panic::catch_unwind::hf60d56329ebbb81c [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panic.rs:434:14 [INFO] [stdout] 37: 0x5609664b5b18 - std::thread::Builder::spawn_unchecked::{{closure}}::hb1722d498f4ce777 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/thread/mod.rs:475:30 [INFO] [stdout] 38: 0x5609664b5b18 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h15eb01325730c962 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x5609667282f7 - as core::ops::function::FnOnce>::call_once::h09f167e08fc945ff [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 40: 0x5609667282f7 - as core::ops::function::FnOnce>::call_once::hf814fe85eeb118e0 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 41: 0x5609667282f7 - std::sys::unix::thread::Thread::new::thread_start::hb71b17934c5f5e68 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys/unix/thread.rs:91:17 [INFO] [stdout] 42: 0x7f4919f9a609 - start_thread [INFO] [stdout] 43: 0x7f4919d6c293 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_merge_organisms stdout ---- [INFO] [stdout] thread 'tests::tests::test_merge_organisms' panicked at 'file not found: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/uniprot.rs:34:34 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x560966720d70 - std::backtrace_rs::backtrace::libunwind::trace::h99dbb39dca18857d [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stdout] 1: 0x560966720d70 - std::backtrace_rs::backtrace::trace_unsynchronized::h832861927e9cfedf [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x560966720d70 - std::sys_common::backtrace::_print_fmt::h3d18154c77dcf310 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x560966720d70 - ::fmt::he312f4ad5b9bb346 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x56096674572c - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/fmt/mod.rs:1115:17 [INFO] [stdout] 5: 0x56096671d9e5 - std::io::Write::write_fmt::h65d36b96410d80d7 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/io/mod.rs:1665:15 [INFO] [stdout] 6: 0x560966722f5b - std::sys_common::backtrace::_print::h65d996766de40da4 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x560966722f5b - std::sys_common::backtrace::print::h40df9727e635f303 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x560966722f5b - std::panicking::default_hook::{{closure}}::hd2da4327dea91a51 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:208:50 [INFO] [stdout] 9: 0x560966722a6c - std::panicking::default_hook::h3d55120ad6ada158 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:222:9 [INFO] [stdout] 10: 0x560966723624 - std::panicking::rust_panic_with_hook::hf85dd0bb545e3b55 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:622:17 [INFO] [stdout] 11: 0x560966723107 - std::panicking::begin_panic_handler::{{closure}}::h736ae969434da9fa [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:519:13 [INFO] [stdout] 12: 0x56096672124c - std::sys_common::backtrace::__rust_end_short_backtrace::h6133bb80b1d6c3e0 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 13: 0x560966723069 - rust_begin_unwind [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:515:5 [INFO] [stdout] 14: 0x5609663e58c1 - core::panicking::panic_fmt::hcf5f6d96e1dd7099 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/panicking.rs:92:14 [INFO] [stdout] 15: 0x5609663e59b3 - core::result::unwrap_failed::he898b02f57993c42 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/result.rs:1599:5 [INFO] [stdout] 16: 0x560966420150 - core::result::Result::expect::hd7b35daaf1674cfa [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/result.rs:1241:23 [INFO] [stdout] 17: 0x56096644d908 - global_supertrees::uniprot::load_mapping_file::hefa029a670ff39bf [INFO] [stdout] at /opt/rustwide/workdir/src/uniprot.rs:34:13 [INFO] [stdout] 18: 0x560966442f9a - global_supertrees::tests::tests::test_merge_organisms::hcc2180a51c5be4ab [INFO] [stdout] at /opt/rustwide/workdir/src/tests.rs:237:26 [INFO] [stdout] 19: 0x560966442f4a - global_supertrees::tests::tests::test_merge_organisms::{{closure}}::hd6999c458d721c88 [INFO] [stdout] at /opt/rustwide/workdir/src/tests.rs:235:5 [INFO] [stdout] 20: 0x56096649042e - core::ops::function::FnOnce::call_once::h502f133ca3aaa768 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x5609664e41f3 - core::ops::function::FnOnce::call_once::h227fa683a5745bd3 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x5609664e41f3 - test::__rust_begin_short_backtrace::h3a193bd570ada00a [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/test/src/lib.rs:578:5 [INFO] [stdout] 23: 0x5609664e2c68 - as core::ops::function::FnOnce>::call_once::h262d2f411717179a [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 24: 0x5609664e2c68 - as core::ops::function::FnOnce<()>>::call_once::hfec00caec3e52a7b [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panic.rs:347:9 [INFO] [stdout] 25: 0x5609664e2c68 - std::panicking::try::do_call::ha5f42e76ffda569d [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:401:40 [INFO] [stdout] 26: 0x5609664e2c68 - std::panicking::try::h53f36df0935b9500 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:365:19 [INFO] [stdout] 27: 0x5609664e2c68 - std::panic::catch_unwind::h5a497f74b0ce006f [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panic.rs:434:14 [INFO] [stdout] 28: 0x5609664e2c68 - test::run_test_in_process::hab0aead337f48a88 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/test/src/lib.rs:601:18 [INFO] [stdout] 29: 0x5609664e2c68 - test::run_test::run_test_inner::{{closure}}::h632c383164d4cba2 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/test/src/lib.rs:493:39 [INFO] [stdout] 30: 0x5609664b13ed - test::run_test::run_test_inner::{{closure}}::h7c4b3612891a4b58 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/test/src/lib.rs:520:37 [INFO] [stdout] 31: 0x5609664b13ed - std::sys_common::backtrace::__rust_begin_short_backtrace::habf7d8a08419d00e [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 32: 0x5609664b5b18 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h3acba502e2068204 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/thread/mod.rs:476:17 [INFO] [stdout] 33: 0x5609664b5b18 - as core::ops::function::FnOnce<()>>::call_once::h526ef819c1964a35 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panic.rs:347:9 [INFO] [stdout] 34: 0x5609664b5b18 - std::panicking::try::do_call::hc0b5663d6373cec8 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:401:40 [INFO] [stdout] 35: 0x5609664b5b18 - std::panicking::try::ha9007ede9d35dcd6 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:365:19 [INFO] [stdout] 36: 0x5609664b5b18 - std::panic::catch_unwind::hf60d56329ebbb81c [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panic.rs:434:14 [INFO] [stdout] 37: 0x5609664b5b18 - std::thread::Builder::spawn_unchecked::{{closure}}::hb1722d498f4ce777 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/thread/mod.rs:475:30 [INFO] [stdout] 38: 0x5609664b5b18 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h15eb01325730c962 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x5609667282f7 - as core::ops::function::FnOnce>::call_once::h09f167e08fc945ff [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 40: 0x5609667282f7 - as core::ops::function::FnOnce>::call_once::hf814fe85eeb118e0 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 41: 0x5609667282f7 - std::sys::unix::thread::Thread::new::thread_start::hb71b17934c5f5e68 [INFO] [stdout] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys/unix/thread.rs:91:17 [INFO] [stdout] 42: 0x7f4919f9a609 - start_thread [INFO] [stdout] 43: 0x7f4919d6c293 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::tests::test_batch_id_tax_mapping [INFO] [stdout] tests::tests::test_merge_organisms [INFO] [stdout] [INFO] [stdout] test result: FAILED. 14 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.97s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--bin global-supertrees' [INFO] running `Command { std: "docker" "inspect" "e6ca7af8329a0864a759bf7dfc61819df20a3ec40ca192c739913cb8807cc635", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e6ca7af8329a0864a759bf7dfc61819df20a3ec40ca192c739913cb8807cc635", kill_on_drop: false }` [INFO] [stdout] e6ca7af8329a0864a759bf7dfc61819df20a3ec40ca192c739913cb8807cc635