[INFO] fetching crate gchemol 0.0.41...
[INFO] testing gchemol-0.0.41 against try#d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2 for pr-86479
[INFO] extracting crate gchemol 0.0.41 into /workspace/builds/worker-5/source
[INFO] validating manifest of crates.io crate gchemol 0.0.41 on toolchain d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gchemol 0.0.41
[INFO] finished tweaking crates.io crate gchemol 0.0.41
[INFO] tweaked toml for crates.io crate gchemol 0.0.41 written to /workspace/builds/worker-5/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded gchemol-geometry v0.0.39
[INFO] [stderr]   Downloaded gchemol-readwrite v0.0.41
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 6ea99d41733ed79d69329208bebc4cee8f9c8b8c9c088d4ba3486f413434cbc1
[INFO] running `Command { std: "docker" "start" "-a" "6ea99d41733ed79d69329208bebc4cee8f9c8b8c9c088d4ba3486f413434cbc1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6ea99d41733ed79d69329208bebc4cee8f9c8b8c9c088d4ba3486f413434cbc1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6ea99d41733ed79d69329208bebc4cee8f9c8b8c9c088d4ba3486f413434cbc1", kill_on_drop: false }`
[INFO] [stdout] 6ea99d41733ed79d69329208bebc4cee8f9c8b8c9c088d4ba3486f413434cbc1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 8b74a74e9058725758c0da14c037e2fb55a2e1e8a277895e434992298a05719c
[INFO] running `Command { std: "docker" "start" "-a" "8b74a74e9058725758c0da14c037e2fb55a2e1e8a277895e434992298a05719c", kill_on_drop: false }`
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling ucd-trie v0.1.3
[INFO] [stderr]    Compiling hashbrown v0.11.2
[INFO] [stderr]    Compiling unic-char-range v0.9.0
[INFO] [stderr]    Compiling unic-common v0.9.0
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling deunicode v0.4.3
[INFO] [stderr]    Compiling humansize v1.1.1
[INFO] [stderr]    Compiling quick-error v2.0.1
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling percent-encoding v2.1.0
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling thread_local v1.1.3
[INFO] [stderr]    Compiling itertools v0.8.2
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling unic-ucd-version v0.9.0
[INFO] [stderr]    Compiling unic-char-property v0.9.0
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling bstr v0.2.16
[INFO] [stderr]    Compiling slug v0.1.4
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling pest v2.1.3
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling unic-ucd-segment v0.9.0
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling bimap v0.4.0
[INFO] [stderr]    Compiling envy v0.4.2
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling unic-segment v0.9.0
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling pest_meta v2.1.3
[INFO] [stderr]    Compiling rand_distr v0.2.2
[INFO] [stderr]    Compiling env_logger v0.7.1
[INFO] [stderr]    Compiling env_logger v0.8.4
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.0
[INFO] [stderr]    Compiling globset v0.4.8
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling alga v0.9.3
[INFO] [stderr]    Compiling pretty_env_logger v0.4.0
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling pest_generator v2.1.3
[INFO] [stderr]    Compiling gchemol-gut v0.1.5
[INFO] [stderr]    Compiling ignore v0.4.18
[INFO] [stderr]    Compiling gchemol-graph v0.1.1
[INFO] [stderr]    Compiling nalgebra v0.20.0
[INFO] [stderr]    Compiling globwalk v0.8.1
[INFO] [stderr]    Compiling pest_derive v2.1.0
[INFO] [stderr]    Compiling chrono-tz v0.5.3
[INFO] [stderr]    Compiling gchemol-parser v0.2.1
[INFO] [stderr]    Compiling handlebars v3.5.5
[INFO] [stderr]    Compiling tera v1.12.1
[INFO] [stderr]    Compiling vecfx v0.1.2
[INFO] [stderr]    Compiling octree v0.1.0
[INFO] [stderr]    Compiling gchemol-lattice v0.1.0
[INFO] [stderr]    Compiling gchemol-geometry v0.0.39
[INFO] [stderr]    Compiling gchemol-neighbors v0.1.0
[INFO] [stderr]    Compiling gchemol-core v0.0.42
[INFO] [stderr]    Compiling gchemol-readwrite v0.0.41
[INFO] [stderr]    Compiling gchemol v0.0.41 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 03s
[INFO] running `Command { std: "docker" "inspect" "8b74a74e9058725758c0da14c037e2fb55a2e1e8a277895e434992298a05719c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8b74a74e9058725758c0da14c037e2fb55a2e1e8a277895e434992298a05719c", kill_on_drop: false }`
[INFO] [stdout] 8b74a74e9058725758c0da14c037e2fb55a2e1e8a277895e434992298a05719c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] b68c8d0d00a5477c1b9f5ee8824187fb0b6f7caa9da2b2e0d6040e4924423d71
[INFO] running `Command { std: "docker" "start" "-a" "b68c8d0d00a5477c1b9f5ee8824187fb0b6f7caa9da2b2e0d6040e4924423d71", kill_on_drop: false }`
[INFO] [stderr]    Compiling gchemol v0.0.41 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `mol`
[INFO] [stdout]   --> tests/io.rs:44:9
[INFO] [stdout]    |
[INFO] [stdout] 44 |     for mol in gchemol::io::read(&f).expect("read mol2") {
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_mol`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `gchemol::prelude::*`
[INFO] [stdout]  --> tests/molecule.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use gchemol::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 9.33s
[INFO] running `Command { std: "docker" "inspect" "b68c8d0d00a5477c1b9f5ee8824187fb0b6f7caa9da2b2e0d6040e4924423d71", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b68c8d0d00a5477c1b9f5ee8824187fb0b6f7caa9da2b2e0d6040e4924423d71", kill_on_drop: false }`
[INFO] [stdout] b68c8d0d00a5477c1b9f5ee8824187fb0b6f7caa9da2b2e0d6040e4924423d71
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 98e09e2e87f970d4ebd685012d628eb6398e144dcb5ad01b8af65b9546dc3d1e
[INFO] running `Command { std: "docker" "start" "-a" "98e09e2e87f970d4ebd685012d628eb6398e144dcb5ad01b8af65b9546dc3d1e", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `gchemol::prelude::*`
[INFO] [stderr]  --> tests/molecule.rs:3:5
[INFO] [stderr]   |
[INFO] [stderr] 3 | use gchemol::prelude::*;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `mol`
[INFO] [stderr]   --> tests/io.rs:44:9
[INFO] [stderr]    |
[INFO] [stderr] 44 |     for mol in gchemol::io::read(&f).expect("read mol2") {
[INFO] [stderr]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_mol`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `gchemol` (test "molecule") generated 1 warning
[INFO] [stderr] warning: `gchemol` (test "io") generated 1 warning
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.14s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/gchemol-c10d7156f918c93c)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/crystal.rs (/opt/rustwide/target/debug/deps/crystal-3eb350c742fedfd9)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test test_crystal ... ok
[INFO] [stdout] test test_supercell ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/io.rs (/opt/rustwide/target/debug/deps/io-30caf5c5e5481780)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test io_from_file_to_file ... ok
[INFO] [stdout] test read_write_molecules ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.08s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/molecule.rs (/opt/rustwide/target/debug/deps/molecule-dcaf7346b5c4b664)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stderr]    Doc-tests gchemol
[INFO] [stdout] test test_molecule_properties ... ok
[INFO] [stdout] test test_atom_data ... ok
[INFO] [stdout] test test_new_atom ... ok
[INFO] [stdout] test test_new_molecule ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "98e09e2e87f970d4ebd685012d628eb6398e144dcb5ad01b8af65b9546dc3d1e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "98e09e2e87f970d4ebd685012d628eb6398e144dcb5ad01b8af65b9546dc3d1e", kill_on_drop: false }`
[INFO] [stdout] 98e09e2e87f970d4ebd685012d628eb6398e144dcb5ad01b8af65b9546dc3d1e