[INFO] cloning repository https://github.com/clinico-omics/omics-tools
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clinico-omics/omics-tools" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fomics-tools", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fomics-tools'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 225d596d6872b010a31f9f8703e5294decfa73ef
[INFO] testing clinico-omics/omics-tools against try#d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2 for pr-86479
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fomics-tools" "/workspace/builds/worker-0/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/clinico-omics/omics-tools on toolchain d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-0/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/clinico-omics/omics-tools
[INFO] finished tweaking git repo https://github.com/clinico-omics/omics-tools
[INFO] tweaked toml for git repo https://github.com/clinico-omics/omics-tools written to /workspace/builds/worker-0/source/Cargo.toml
[INFO] crate git repo https://github.com/clinico-omics/omics-tools already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /workspace/builds/worker-0/source/bam-util/Cargo.toml
[INFO] [stderr] workspace: /workspace/builds/worker-0/source/Cargo.toml
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /workspace/builds/worker-0/source/vcf-util/Cargo.toml
[INFO] [stderr] workspace: /workspace/builds/worker-0/source/Cargo.toml
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded openssl-src v111.15.0+1.1.1k
[INFO] [stderr]   Downloaded vcf v0.5.0
[INFO] [stderr]   Downloaded hts-sys v1.11.1-fix1
[INFO] [stderr]   Downloaded cloudflare-zlib-sys v0.2.0
[INFO] [stderr]   Downloaded rusqlite v0.24.2
[INFO] [stderr]   Downloaded termion v1.5.6
[INFO] [stderr]   Downloaded rust-htslib v0.35.2
[INFO] [stderr]   Downloaded redox_termios v0.1.2
[INFO] [stderr]   Downloaded bio-types v0.11.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 73c88395c1a491cc502f3241e2f4a6a051ae3ecf12122d1bab57ba6e1cf7276c
[INFO] running `Command { std: "docker" "start" "-a" "73c88395c1a491cc502f3241e2f4a6a051ae3ecf12122d1bab57ba6e1cf7276c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "73c88395c1a491cc502f3241e2f4a6a051ae3ecf12122d1bab57ba6e1cf7276c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "73c88395c1a491cc502f3241e2f4a6a051ae3ecf12122d1bab57ba6e1cf7276c", kill_on_drop: false }`
[INFO] [stdout] 73c88395c1a491cc502f3241e2f4a6a051ae3ecf12122d1bab57ba6e1cf7276c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d3b776732bcd43358ee0df5764a6b0ec97dece7a344e82aba8ab35af904bc148
[INFO] running `Command { std: "docker" "start" "-a" "d3b776732bcd43358ee0df5764a6b0ec97dece7a344e82aba8ab35af904bc148", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/bam-util/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/vcf-util/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr]    Compiling libc v0.2.94
[INFO] [stderr]    Compiling syn v1.0.72
[INFO] [stderr]    Compiling unicode-segmentation v1.7.1
[INFO] [stderr]    Compiling void v1.0.2
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling lazy_static v0.2.11
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling gimli v0.24.0
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling rustc-demangle v0.1.19
[INFO] [stderr]    Compiling object v0.24.0
[INFO] [stderr]    Compiling arrayvec v0.5.2
[INFO] [stderr]    Compiling exitcode v1.1.2
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling fallible-iterator v0.2.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling fallible-streaming-iterator v0.1.9
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling proc-macro2 v1.0.26
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]    Compiling unreachable v1.0.0
[INFO] [stderr]    Compiling unicode-normalization v0.1.17
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling hashlink v0.6.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling thread_local v0.3.4
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling heck v0.3.2
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling jobserver v0.1.22
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling time v0.1.44
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling idna v0.2.3
[INFO] [stderr]    Compiling cc v1.0.67
[INFO] [stderr]    Compiling url v2.2.2
[INFO] [stderr]    Compiling openssl-src v111.15.0+1.1.1k
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling openssl-sys v0.9.63
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling bzip2-sys v0.1.10+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling curl-sys v0.4.43+curl-7.76.0
[INFO] [stderr]    Compiling backtrace v0.3.59
[INFO] [stderr]    Compiling cloudflare-zlib-sys v0.2.0
[INFO] [stderr]    Compiling hts-sys v1.11.1-fix1
[INFO] [stderr]    Compiling libsqlite3-sys v0.20.1
[INFO] [stderr]    Compiling stderrlog v0.4.3
[INFO] [stderr] error: could not compile `regex`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustc --crate-name regex --edition=2018 /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/regex-1.5.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="aho-corasick"' --cfg 'feature="default"' --cfg 'feature="memchr"' --cfg 'feature="perf"' --cfg 'feature="perf-cache"' --cfg 'feature="perf-dfa"' --cfg 'feature="perf-inline"' --cfg 'feature="perf-literal"' --cfg 'feature="std"' --cfg 'feature="unicode"' --cfg 'feature="unicode-age"' --cfg 'feature="unicode-bool"' --cfg 'feature="unicode-case"' --cfg 'feature="unicode-gencat"' --cfg 'feature="unicode-perl"' --cfg 'feature="unicode-script"' --cfg 'feature="unicode-segment"' -C metadata=ad04562af618083d -C extra-filename=-ad04562af618083d --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern aho_corasick=/opt/rustwide/target/debug/deps/libaho_corasick-250202f4e3df1212.rmeta --extern memchr=/opt/rustwide/target/debug/deps/libmemchr-681e4e98e8957ba6.rmeta --extern regex_syntax=/opt/rustwide/target/debug/deps/libregex_syntax-cfec10257cbd629b.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "d3b776732bcd43358ee0df5764a6b0ec97dece7a344e82aba8ab35af904bc148", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d3b776732bcd43358ee0df5764a6b0ec97dece7a344e82aba8ab35af904bc148", kill_on_drop: false }`
[INFO] [stdout] d3b776732bcd43358ee0df5764a6b0ec97dece7a344e82aba8ab35af904bc148