[INFO] cloning repository https://github.com/chfi/rs-gfa-utils [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/chfi/rs-gfa-utils" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frs-gfa-utils", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frs-gfa-utils'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] c89c468ac28f9c04ab8ca7e10c7224d36ee8791d [INFO] testing chfi/rs-gfa-utils against try#d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2 for pr-86479 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frs-gfa-utils" "/workspace/builds/worker-7/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/chfi/rs-gfa-utils on toolchain d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/chfi/rs-gfa-utils [INFO] finished tweaking git repo https://github.com/chfi/rs-gfa-utils [INFO] tweaked toml for git repo https://github.com/chfi/rs-gfa-utils written to /workspace/builds/worker-7/source/Cargo.toml [INFO] crate git repo https://github.com/chfi/rs-gfa-utils already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded boomphf v0.5.9 [INFO] [stderr] Downloaded wyhash v0.5.0 [INFO] [stderr] Downloaded three-edge-connected v0.2.2 [INFO] [stderr] Downloaded handlegraph v0.7.0-alpha.7 [INFO] [stderr] Downloaded saboten v0.1.2-alpha.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 14af610ae72cc93ac2b19fdc7e0aa4abf779013d15f72d5f91cc87a4d5b406e4 [INFO] running `Command { std: "docker" "start" "-a" "14af610ae72cc93ac2b19fdc7e0aa4abf779013d15f72d5f91cc87a4d5b406e4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "14af610ae72cc93ac2b19fdc7e0aa4abf779013d15f72d5f91cc87a4d5b406e4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "14af610ae72cc93ac2b19fdc7e0aa4abf779013d15f72d5f91cc87a4d5b406e4", kill_on_drop: false }` [INFO] [stdout] 14af610ae72cc93ac2b19fdc7e0aa4abf779013d15f72d5f91cc87a4d5b406e4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8fbe2cc58a23a63b965d647645f7b1ceffc1e5d716a94fe29201fbed645c6c82 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8fbe2cc58a23a63b965d647645f7b1ceffc1e5d716a94fe29201fbed645c6c82", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.33 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling serde_derive v1.0.114 [INFO] [stderr] Compiling serde v1.0.114 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling arrayvec v0.5.1 [INFO] [stderr] Compiling hashbrown v0.9.1 [INFO] [stderr] Compiling rand_core v0.6.1 [INFO] [stderr] Compiling fixedbitset v0.2.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.1 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.3 [INFO] [stderr] Compiling proc-macro-error v1.0.3 [INFO] [stderr] Compiling proc-macro2 v1.0.18 [INFO] [stderr] Compiling wyhash v0.5.0 [INFO] [stderr] Compiling memmap v0.7.0 [INFO] [stderr] Compiling terminal_size v0.1.13 [INFO] [stderr] Compiling termios v0.3.2 [INFO] [stderr] Compiling time v0.1.44 [INFO] [stderr] Compiling aho-corasick v0.7.12 [INFO] [stderr] Compiling lexical-core v0.7.6 [INFO] [stderr] Compiling clap v2.33.1 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.0 [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling succinct v0.5.2 [INFO] [stderr] Compiling chrono v0.4.19 [INFO] [stderr] Compiling console v0.12.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling pretty_env_logger v0.4.0 [INFO] [stderr] Compiling indicatif v0.15.0 [INFO] [stderr] Compiling boomphf v0.5.9 [INFO] [stderr] Compiling syn-mid v0.5.0 [INFO] [stderr] Compiling bytemuck_derive v1.0.0 [INFO] [stderr] Compiling bytemuck v1.4.1 [INFO] [stderr] Compiling structopt-derive v0.4.8 [INFO] [stderr] Compiling structopt v0.3.15 [INFO] [stderr] Compiling serde_json v1.0.57 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling gfa v0.10.0 [INFO] [stderr] Compiling three-edge-connected v0.2.2 [INFO] [stderr] Compiling handlegraph v0.7.0-alpha.7 [INFO] [stderr] Compiling saboten v0.1.2-alpha.3 [INFO] [stderr] Compiling gfautil v0.4.0-alpha.5 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `gfa::gfa::Orientation::Forward` [INFO] [stdout] --> src/variants.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use gfa::gfa::Orientation::Forward; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `hash_subpath` [INFO] [stdout] --> src/variants.rs:27:8 [INFO] [stdout] | [INFO] [stdout] 27 | fn hash_subpath(&self, path: usize, from: usize, to: usize) -> Option { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 48s [INFO] running `Command { std: "docker" "inspect" "8fbe2cc58a23a63b965d647645f7b1ceffc1e5d716a94fe29201fbed645c6c82", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8fbe2cc58a23a63b965d647645f7b1ceffc1e5d716a94fe29201fbed645c6c82", kill_on_drop: false }` [INFO] [stdout] 8fbe2cc58a23a63b965d647645f7b1ceffc1e5d716a94fe29201fbed645c6c82 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3805077059af7f176a4e7858bad278dbf96bfb93c9cb2525f16f6b91d9c53dea [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "3805077059af7f176a4e7858bad278dbf96bfb93c9cb2525f16f6b91d9c53dea", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling gfautil v0.4.0-alpha.5 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `gfa::gfa::Orientation::Forward` [INFO] [stdout] --> src/variants.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use gfa::gfa::Orientation::Forward; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `hash_subpath` [INFO] [stdout] --> src/variants.rs:27:8 [INFO] [stdout] | [INFO] [stdout] 27 | fn hash_subpath(&self, path: usize, from: usize, to: usize) -> Option { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gfa::gfa::Orientation::Forward` [INFO] [stdout] --> src/variants.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use gfa::gfa::Orientation::Forward; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `hash_subpath` [INFO] [stdout] --> src/variants.rs:27:8 [INFO] [stdout] | [INFO] [stdout] 27 | fn hash_subpath(&self, path: usize, from: usize, to: usize) -> Option { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 3m 23s [INFO] running `Command { std: "docker" "inspect" "3805077059af7f176a4e7858bad278dbf96bfb93c9cb2525f16f6b91d9c53dea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3805077059af7f176a4e7858bad278dbf96bfb93c9cb2525f16f6b91d9c53dea", kill_on_drop: false }` [INFO] [stdout] 3805077059af7f176a4e7858bad278dbf96bfb93c9cb2525f16f6b91d9c53dea [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 1aed60499edb4c28cf08be6df286078affb93dc2f4816f99196b5edb896a114f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "1aed60499edb4c28cf08be6df286078affb93dc2f4816f99196b5edb896a114f", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `gfa::gfa::Orientation::Forward` [INFO] [stderr] --> src/variants.rs:14:5 [INFO] [stderr] | [INFO] [stderr] 14 | use gfa::gfa::Orientation::Forward; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: associated function is never used: `hash_subpath` [INFO] [stderr] --> src/variants.rs:27:8 [INFO] [stderr] | [INFO] [stderr] 27 | fn hash_subpath(&self, path: usize, from: usize, to: usize) -> Option { [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `gfautil` (lib) generated 2 warnings [INFO] [stderr] warning: `gfautil` (lib test) generated 2 warnings (2 duplicates) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.10s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/gfautil-03787714ea69b879) [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/gfautil-062a60177656c780) [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test commands::convert_names::tests::name_map_path_correct ... ok [INFO] [stdout] test commands::convert_names::tests::converted_gfa_path_correct ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/gaf_convert.rs (/opt/rustwide/target/debug/deps/gaf_convert-5f73eb69021dd12a) [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test gafpaf_overlaps ... ok [INFO] [stdout] test gafpaf_no_overlaps ... ok [INFO] [stderr] Doc-tests gfautil [INFO] [stdout] test gafpaf_dels ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "1aed60499edb4c28cf08be6df286078affb93dc2f4816f99196b5edb896a114f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1aed60499edb4c28cf08be6df286078affb93dc2f4816f99196b5edb896a114f", kill_on_drop: false }` [INFO] [stdout] 1aed60499edb4c28cf08be6df286078affb93dc2f4816f99196b5edb896a114f