[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 15f07e7e103cd4bd5474c7098c2c3d7a72ede2bd [INFO] testing 38/pyd4 against try#d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2 for pr-86479 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-7/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-7/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pyo3-derive-backend v0.12.1 [INFO] [stderr] Downloaded unindent v0.1.6 [INFO] [stderr] Downloaded pyo3cls v0.12.1 [INFO] [stderr] Downloaded pyo3 v0.12.1 [INFO] [stderr] Downloaded d4-framefile v0.1.13 [INFO] [stderr] Downloaded d4 v0.1.13 [INFO] [stderr] Downloaded d4-hts v0.1.13 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 296fd5d9cc738297d8eeb277f86a13aa099601bf5321dba6a95f9c8f04d6fdab [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "296fd5d9cc738297d8eeb277f86a13aa099601bf5321dba6a95f9c8f04d6fdab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "296fd5d9cc738297d8eeb277f86a13aa099601bf5321dba6a95f9c8f04d6fdab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "296fd5d9cc738297d8eeb277f86a13aa099601bf5321dba6a95f9c8f04d6fdab", kill_on_drop: false }` [INFO] [stdout] 296fd5d9cc738297d8eeb277f86a13aa099601bf5321dba6a95f9c8f04d6fdab [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a882d7d48ad4d924efbcd6ca1720430ce3b5ab09cbc1f75df07716db5c573781 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a882d7d48ad4d924efbcd6ca1720430ce3b5ab09cbc1f75df07716db5c573781", kill_on_drop: false }` [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling libc v0.2.77 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.21 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling syn v1.0.41 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling rayon-core v1.8.1 [INFO] [stderr] Compiling serde v1.0.116 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling proc-macro-hack v0.5.18 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling adler v0.2.3 [INFO] [stderr] Compiling smallvec v1.4.2 [INFO] [stderr] Compiling unindent v0.1.6 [INFO] [stderr] Compiling inventory v0.1.9 [INFO] [stderr] Compiling ppv-lite86 v0.2.9 [INFO] [stderr] Compiling serde_derive v1.0.116 [INFO] [stderr] Compiling itoa v0.4.6 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling pyo3 v0.12.1 [INFO] [stderr] Compiling instant v0.1.7 [INFO] [stderr] Compiling lock_api v0.4.1 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling miniz_oxide v0.4.2 [INFO] [stderr] Compiling rayon v1.4.0 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling clang-sys v1.0.0 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling parking_lot_core v0.8.0 [INFO] [stderr] Compiling memmap v0.7.0 [INFO] [stderr] Compiling crossbeam-channel v0.4.4 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling flate2 v1.0.17 [INFO] [stderr] Compiling parking_lot v0.11.0 [INFO] [stderr] Compiling crossbeam-deque v0.7.3 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling paste v0.1.18 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling d4-framefile v0.1.13 [INFO] [stderr] Compiling serde_json v1.0.57 [INFO] [stderr] Compiling pyo3-derive-backend v0.12.1 [INFO] [stderr] Compiling ctor v0.1.15 [INFO] [stderr] Compiling inventory-impl v0.1.9 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling pyo3cls v0.12.1 [INFO] [stderr] Compiling indoc v0.3.6 [INFO] [stderr] Compiling d4-hts v0.1.13 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.13` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-2056b2fe95fb3936/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-a358ee6f2bc6ddb2/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-a358ee6f2bc6ddb2/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55ce3e1a2a00 - std::backtrace_rs::backtrace::libunwind::trace::h99dbb39dca18857d [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55ce3e1a2a00 - std::backtrace_rs::backtrace::trace_unsynchronized::h832861927e9cfedf [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55ce3e1a2a00 - std::sys_common::backtrace::_print_fmt::h3d18154c77dcf310 [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55ce3e1a2a00 - ::fmt::he312f4ad5b9bb346 [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55ce3e1c79dc - core::fmt::write::h9a6d9c74526a6c1b [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/fmt/mod.rs:1115:17 [INFO] [stderr] 5: 0x55ce3e19f925 - std::io::Write::write_fmt::h6aced00850e8186f [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/io/mod.rs:1665:15 [INFO] [stderr] 6: 0x55ce3e1a4ecb - std::sys_common::backtrace::_print::h65d996766de40da4 [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55ce3e1a4ecb - std::sys_common::backtrace::print::h40df9727e635f303 [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55ce3e1a4ecb - std::panicking::default_hook::{{closure}}::hd2da4327dea91a51 [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55ce3e1a49a1 - std::panicking::default_hook::h3d55120ad6ada158 [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55ce3e1a5594 - std::panicking::rust_panic_with_hook::hf85dd0bb545e3b55 [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x55ce3e1a5047 - std::panicking::begin_panic_handler::{{closure}}::h736ae969434da9fa [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:517:13 [INFO] [stderr] 12: 0x55ce3e1a2edc - std::sys_common::backtrace::__rust_end_short_backtrace::h6133bb80b1d6c3e0 [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55ce3e1a4fd9 - rust_begin_unwind [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:515:5 [INFO] [stderr] 14: 0x55ce3dc51931 - core::panicking::panic_fmt::hcf5f6d96e1dd7099 [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x55ce3dc5187d - core::panicking::panic::hd695e3b1d0dd4ef4 [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x55ce3dc52a7d - build_script_build::build_own_htslib::hee9ed3e52cccf233 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] 17: 0x55ce3dc52ede - build_script_build::main::haae2f13b7a3ddecb [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:66:9 [INFO] [stderr] 18: 0x55ce3dc5460b - core::ops::function::FnOnce::call_once::h6abb868623eded98 [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x55ce3dc53cfe - std::sys_common::backtrace::__rust_begin_short_backtrace::hb896950484f1bac8 [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x55ce3dc54511 - std::rt::lang_start::{{closure}}::h2e5a82791daf8270 [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/rt.rs:63:18 [INFO] [stderr] 21: 0x55ce3e1a5b9a - core::ops::function::impls:: for &F>::call_once::h5a0483c8d4e9c15d [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x55ce3e1a5b9a - std::panicking::try::do_call::h6ad7918f175f6ddd [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:401:40 [INFO] [stderr] 23: 0x55ce3e1a5b9a - std::panicking::try::hcd5af58f52320690 [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:365:19 [INFO] [stderr] 24: 0x55ce3e1a5b9a - std::panic::catch_unwind::hf1ae33ba67228f1e [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panic.rs:434:14 [INFO] [stderr] 25: 0x55ce3e1a5b9a - std::rt::lang_start_internal::{{closure}}::h4a87bc0aa1312dc5 [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/rt.rs:45:48 [INFO] [stderr] 26: 0x55ce3e1a5b9a - std::panicking::try::do_call::h1ade2a52932fc900 [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:401:40 [INFO] [stderr] 27: 0x55ce3e1a5b9a - std::panicking::try::h6f4a87ad169e174b [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panicking.rs:365:19 [INFO] [stderr] 28: 0x55ce3e1a5b9a - std::panic::catch_unwind::h043c7f08019f9e2a [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/panic.rs:434:14 [INFO] [stderr] 29: 0x55ce3e1a5b9a - std::rt::lang_start_internal::h82825699ebfd70bd [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/rt.rs:45:20 [INFO] [stderr] 30: 0x55ce3dc544e0 - std::rt::lang_start::h5139e4f3cd9ce30f [INFO] [stderr] at /rustc/d2e9fff28e244f1ea4927194f1f9b77f93e2ffe2/library/std/src/rt.rs:62:5 [INFO] [stderr] 31: 0x55ce3dc5352c - main [INFO] [stderr] 32: 0x7f72fdd060b3 - __libc_start_main [INFO] [stderr] 33: 0x55ce3dc5212e - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "a882d7d48ad4d924efbcd6ca1720430ce3b5ab09cbc1f75df07716db5c573781", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a882d7d48ad4d924efbcd6ca1720430ce3b5ab09cbc1f75df07716db5c573781", kill_on_drop: false }` [INFO] [stdout] a882d7d48ad4d924efbcd6ca1720430ce3b5ab09cbc1f75df07716db5c573781