[INFO] fetching crate rustybam 0.1.3...
[INFO] testing rustybam-0.1.3 against master#b70888601af92f6cdc0364abab3446e418b91d36 for pr-86479
[INFO] extracting crate rustybam 0.1.3 into /workspace/builds/worker-0/source
[INFO] validating manifest of crates.io crate rustybam 0.1.3 on toolchain b70888601af92f6cdc0364abab3446e418b91d36
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate rustybam 0.1.3
[INFO] finished tweaking crates.io crate rustybam 0.1.3
[INFO] tweaked toml for crates.io crate rustybam 0.1.3 written to /workspace/builds/worker-0/source/Cargo.toml
[INFO] crate crates.io crate rustybam 0.1.3 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 8ecddf81cbf5e2f54a7bae7d37bf3ece870aa48953390052eb7ed15e809bdf02
[INFO] running `Command { std: "docker" "start" "-a" "8ecddf81cbf5e2f54a7bae7d37bf3ece870aa48953390052eb7ed15e809bdf02", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8ecddf81cbf5e2f54a7bae7d37bf3ece870aa48953390052eb7ed15e809bdf02", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8ecddf81cbf5e2f54a7bae7d37bf3ece870aa48953390052eb7ed15e809bdf02", kill_on_drop: false }`
[INFO] [stdout] 8ecddf81cbf5e2f54a7bae7d37bf3ece870aa48953390052eb7ed15e809bdf02
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 39413b474766a65e890a9ed38cb0456e2886f14561356763f530e6cae4230353
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "39413b474766a65e890a9ed38cb0456e2886f14561356763f530e6cae4230353", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.27
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.73
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling serde_derive v1.0.126
[INFO] [stderr]    Compiling serde v1.0.126
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling crossbeam-utils v0.8.5
[INFO] [stderr]    Compiling ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling typenum v1.13.0
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling linked-hash-map v0.5.4
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling os_str_bytes v2.4.0
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling anyhow v1.0.42
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling bio v0.34.0
[INFO] [stderr]    Compiling fixedbitset v0.2.0
[INFO] [stderr]    Compiling triple_accel v0.3.4
[INFO] [stderr]    Compiling strum v0.20.0
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling memoffset v0.6.4
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling tinyvec v1.2.0
[INFO] [stderr]    Compiling textwrap v0.12.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling yaml-rust v0.4.5
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling jobserver v0.1.22
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling colored v2.0.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.1
[INFO] [stderr]    Compiling cc v1.0.69
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling unicode-normalization v0.1.19
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling generic-array v0.13.3
[INFO] [stderr]    Compiling crossbeam-deque v0.8.0
[INFO] [stderr]    Compiling openssl-src v111.15.0+1.1.1k
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling idna v0.2.3
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling num-complex v0.3.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling openssl-sys v0.9.65
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.44+curl-7.77.0
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling hts-sys v1.11.1-fix2
[INFO] [stderr]    Compiling url v2.2.2
[INFO] [stderr]    Compiling ndarray v0.14.0
[INFO] [stderr]    Compiling alga v0.9.3
[INFO] [stderr]    Compiling rand_distr v0.2.2
[INFO] [stderr]    Compiling nalgebra v0.19.0
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.2
[INFO] [stderr]    Compiling thiserror-impl v1.0.26
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling calmio_filters v0.1.0
[INFO] [stderr]    Compiling calm_io v0.1.1
[INFO] [stderr]    Compiling enum-map v0.6.4
[INFO] [stderr]    Compiling thiserror v1.0.26
[INFO] [stderr]    Compiling bio-types v0.12.0
[INFO] [stderr]    Compiling statrs v0.13.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bstr v0.2.16
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling clap v3.0.0-beta.2
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling clap_generate v3.0.0-beta.2
[INFO] [stderr]    Compiling rustybam v0.1.3 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling rust-htslib v0.36.0
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 52s
[INFO] running `Command { std: "docker" "inspect" "39413b474766a65e890a9ed38cb0456e2886f14561356763f530e6cae4230353", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "39413b474766a65e890a9ed38cb0456e2886f14561356763f530e6cae4230353", kill_on_drop: false }`
[INFO] [stdout] 39413b474766a65e890a9ed38cb0456e2886f14561356763f530e6cae4230353
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 87dbbb2d7694fb536f14d7c44217220178bdd603bf8356eb220ec066b8f8ed1f
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "87dbbb2d7694fb536f14d7c44217220178bdd603bf8356eb220ec066b8f8ed1f", kill_on_drop: false }`
[INFO] [stderr]    Compiling rustybam v0.1.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 4.57s
[INFO] running `Command { std: "docker" "inspect" "87dbbb2d7694fb536f14d7c44217220178bdd603bf8356eb220ec066b8f8ed1f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "87dbbb2d7694fb536f14d7c44217220178bdd603bf8356eb220ec066b8f8ed1f", kill_on_drop: false }`
[INFO] [stdout] 87dbbb2d7694fb536f14d7c44217220178bdd603bf8356eb220ec066b8f8ed1f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+b70888601af92f6cdc0364abab3446e418b91d36" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 85e9d87c3977ba8aaf4cce56049d8d198cc28089e510eb72424e150d69959d50
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "85e9d87c3977ba8aaf4cce56049d8d198cc28089e510eb72424e150d69959d50", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.07s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/rustybam-df9b0624668b6da1)
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stdout] test liftover::tests::check_invertible ... ok
[INFO] [stdout] test suns::tests::test_convert ... ok
[INFO] [stdout] test suns::tests::test_sun_finding ... ok
[INFO] [stdout] test liftover::tests::test_aln_pair_liftover ... ok
[INFO] [stdout] test bamstats::tests::test_add_cigar_stats ... ok
[INFO] [stdout] test bamstats::tests::test_cigar_stats_from_test_file ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/rustybam-c4e4b80aa3ecb9c5)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests rustybam
[INFO] [stdout] 
[INFO] [stdout] running 17 tests
[INFO] [stderr] error: test failed, to rerun pass '--doc'
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustdoc --edition=2018 --crate-type lib --crate-name rustybam --test /opt/rustwide/workdir/src/lib.rs -L dependency=/opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps -L native=/opt/rustwide/target/debug/build/bzip2-sys-3c45467e74f25917/out/lib -L native=/opt/rustwide/target/debug/build/curl-sys-2585bdd16fa87e2d/out/build -L native=/opt/rustwide/target/debug/build/hts-sys-17dce2c54ebcec96/out -L native=/opt/rustwide/target/debug/build/libz-sys-fb2f1be0ebf0bb90/out/lib -L native=/opt/rustwide/target/debug/build/lzma-sys-56ed053f14df7d8b/out -L native=/opt/rustwide/target/debug/build/openssl-sys-a21a1cee548c5702/out/openssl-build/install/lib --extern bimap=/opt/rustwide/target/debug/deps/libbimap-bcb608911df9f0b7.rlib --extern bio=/opt/rustwide/target/debug/deps/libbio-7e582790e664090d.rlib --extern bio_types=/opt/rustwide/target/debug/deps/libbio_types-12c0ee0f85896bdd.rlib --extern calm_io=/opt/rustwide/target/debug/deps/libcalm_io-4cab6c36e654b4e8.rlib --extern clap=/opt/rustwide/target/debug/deps/libclap-cc0aa018a9a3a8e7.rlib --extern colored=/opt/rustwide/target/debug/deps/libcolored-ba26991771004312.rlib --extern itertools=/opt/rustwide/target/debug/deps/libitertools-78c60b588458e652.rlib --extern rayon=/opt/rustwide/target/debug/deps/librayon-ca6b2c9513b376c5.rlib --extern regex=/opt/rustwide/target/debug/deps/libregex-14edb7dff9ca13a5.rlib --extern rust_htslib=/opt/rustwide/target/debug/deps/librust_htslib-fa2fe7d5bb4cc59a.rlib --extern rustybam=/opt/rustwide/target/debug/deps/librustybam-033ac0112c1d2d61.rlib -C embed-bitcode=no --error-format human` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "85e9d87c3977ba8aaf4cce56049d8d198cc28089e510eb72424e150d69959d50", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "85e9d87c3977ba8aaf4cce56049d8d198cc28089e510eb72424e150d69959d50", kill_on_drop: false }`
[INFO] [stdout] 85e9d87c3977ba8aaf4cce56049d8d198cc28089e510eb72424e150d69959d50